koenvandenberge Goto Github PK

biocstickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

bulkatacgc

Normalization and GC-content effects in bulk ATAC-seq data

cellxgene-documentation

Documentation for the cellxgene product

covid19processing

dayjob

A collection of R functions or settings that I use all the time and was worth collecting.

deseq2

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DESeq2.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DESeq2.

dynnormaliser

edaseq

Clone of the Bioconductor repository for the EDASeq package, see https://bioconductor.org/packages/devel/bioc/html/EDASeq.html for the official development version.

edger

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/edgeR.html Contributions: http://bioinf.wehi.edu.au/edgeR. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=edgeR.

gpfates

hbcregenoe

koenvandenberge.github.io

Personal website.

p63-hbc-diff

Code and resources related to the olfactory HBC stem cell differentiation project (oeHBCdiff)

pigeonstom

A Shiny app for tracking my brother's racing pigeons' performance

pollenzi

prosstt

PRObabilistic Simulations of ScRNA-seq Tree-like Topologies

qsmooth

Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.

rnaseqdtu-1

RNA-seq workflow for differential transcript usage following Salmon quantification

scran

Clone of the Bioconductor repository for the scran package.

traviz

Trajectory functions for visualization and interpretation.