kohlkopf Goto Github PK

.dotfiles

arduinoaugmentedhomebrew

bi621

demo-github-as-team

Demo of working on Github as a team

dialect_clustering

fastq-quality-stats

gatk

Official code repository for GATK versions 4 and up

genomicstechniques

2017 UO BGMP Cohort, Genomics Techniques Lab Notebook documents

guide-to-working-as-team-on-github

A quick guide to working as a team on Github

gus-ld

Genotyping Uncertainty with Sequencing data - Linkage Disequilibrium

hospital_air_metagenomics

hvac_viral_metagenomics

Exploration of metagenomic data from virus particles dislodged from HVAC filters located in double-occupancy university dormitory rooms (Rosario, 2018).

imagej_macros

Collection of useful ImageJ macros, probably .ijm format

kohlkopf.github.io

Personal website displaying resume, projects, and blog posts.

lewis_and_clark_mini_workshop

Short workshop on UNIX usage and single-cell analysis with Lewis & Clark College undergraduates as the audience

mothur

Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.

motif-mark

Plot protein binding motifs on an image of the axon and flanking introns with Python

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

reads-for-assembly

Simulate metagenomic short reads from one or more populations.

resume_review

rootbinder

Set of files to use ROOTbooks in mybinder.org

rosalindprep

Rosalind Bioinformatics practice

rstudio_singularity_slurm

Run Rstudio server on remote host with SLURM using a SOCKS5 tunnel.

scrublet

Detect doublets in single-cell RNA-seq data

seurat

R toolkit for single cell genomics

signac

Hashtag-based population analysis with twitter data using genomics techniques

sound_processing

Sound processing in R using the package tuneR

sparklingwater

Sparkling Water for R

star_batch_alignment

Script for batch alignment using STAR for use after the index is generated from the genome.

topicsingenomicanalysis