Error in /tmp/ about konect-analysis

[kunegis]

Hi Can you give us the content of the file /tmp/o.statistic_size.enron.log ?

…

On 28/11/16 19:07, farocy79 wrote: Hello, I am using Ubuntu 16.04 and when I run the command below this is what I got .... $nice ./mns @network.enron network=enron: ./octave m/statistic_size.m /tmp/o.statistic_size.enron.log *** error in /tmp/o.statistic_size.enron.log main.stu:684:2: command for dat/statistic.size.enron failed with exit status 1 main.stu:386:2: dat/statistic.size.enron is needed by dat/check.enron main.stu:379:19: dat/check.enron is needed by @check.enron main.stu:40:21: @check.enron is needed by @network.enron Would you please check what is the problem ? in output file dat I got three files info.enron , statistic.format.enron and statistic.weights.enron but nothing in plot file? Thank you — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#2>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIHeywcOiB3FRJrR2qHiujjNpdfNE5mSks5rCxhdgaJpZM4K-FdB>.

[farocy79]

Yes sure
its says just
./octave: 49: ./octave: octave: not found
so now I'm looking for the reason.

[kunegis]

This tells you the reason: You need to have Octave installed. Just do $ sudo apt install octave and you should be fine Best Jérôme

…

On 28/11/16 19:17, farocy79 wrote: Yes sure its says just ./octave: 49: ./octave: octave: not found so now I'm looking for the reason. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#2 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIHey113shZVx1AiQ9PAsdY1FT8QEs79ks5rCxrRgaJpZM4K-FdB>.

[farocy79]

Thank you I already did it and chmod for the file of .config/octave, and it did work but still having problem with plotting, so I am looking for the problem and if I did not find the solution I'll contact you. Thx again

[farocy79]

Sorry to bother but after fixing couple things in my computer, now I have this

$ nice ./mns @network.enron
network=enron: ./matlab m/degree.m
/tmp/m.degree.enron.log
main.stu:1106:1: file plot/degree.a.enron.eps was not built by command
main.stu:1104:20: plot/degree.a.enron.eps is needed by @degree.enron
dat/dep.network.enron:1:1: @degree.enron is needed by [dat/dep.network.enron]
main.stu:40:38: [dat/dep.network.enron] is needed by @network.enron

[kunegis]

Can you please provide the content of the file /tmp/m.degree.enron.log

…

On 28/11/16 19:59, farocy79 wrote: Sorry to bother but after fixing couple things in my computer, now I have this $ nice ./mns @network.enron network=enron: ./matlab m/degree.m /tmp/m.degree.enron.log main.stu:1106:1: file plot/degree.a.enron.eps was not built by command main.stu:1104:20: plot/degree.a.enron.eps is needed by @degree.enron dat/dep.network.enron:1:1: @degree.enron is needed by [dat/dep.network.enron] main.stu:40:38: [dat/dep.network.enron] is needed by @network.enron — You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHub <#2 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIHey4m6JHR219M-2VVuMQyLOeuNZTHfks5rCySXgaJpZM4K-FdB>.

[farocy79]

cat /tmp/m.degree.enron.log

                        < M A T L A B (R) >
              Copyright 1984-2016 The MathWorks, Inc.
               R2016b (9.1.0.441655) 64-bit (glnxa64)
                         September 7, 2016

Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/m
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/konect-toolbox/m
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/matlab_bgl
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/wafo-statistics
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/wafo-misc
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/gridxy
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/m
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/konect-toolbox/m
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/matlab_bgl
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/wafo-statistics
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/wafo-misc
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/gridxy

For online documentation, see http://www.mathworks.com/support
For product information, visit www.mathworks.com.

Undefined function or variable 'konect_consts'.

Error in degree (line 37)
consts = konect_consts();

=== FINISHED ===

[kunegis]

Hi All these directories should exist. Can you do ls -l /home/faswad/work/konect-analysis/ on your system ? Jérôme

…

On 28/11/16 20:09, farocy79 wrote: cat /tmp/m.degree.enron.log |< M A T L A B (R) > Copyright 1984-2016 The MathWorks, Inc. R2016b (9.1.0.441655) 64-bit (glnxa64) September 7, 2016 | Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/m Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/konect-toolbox/m Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/matlab_bgl Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/wafo-statistics Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/wafo-misc Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/gridxy Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/m Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/konect-toolbox/m Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/matlab_bgl Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/wafo-statistics Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/wafo-misc Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/gridxy For online documentation, see http://www.mathworks.com/support For product information, visit www.mathworks.com <http://www.mathworks.com>. Undefined function or variable 'konect_consts'. Error in degree (line 37) consts = konect_consts(); === FINISHED === — You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHub <#2 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIHey98LBRbow2r6vnjsUs53jUJmeXz1ks5rCybkgaJpZM4K-FdB>.

[farocy79]

The files is there

total 276
drwxrwxr-x 8 faswad faswad 4096 Nov 28 13:32 .
drwxrwxr-x 7 faswad faswad 4096 Nov 28 14:14 ..
drwxrwxr-x 2 faswad faswad 4096 Nov 28 13:32 c
-rw-rw-r-- 1 faswad faswad 49000 Nov 28 13:32 colormap
-rw-rw-r-- 1 faswad faswad 35147 Nov 28 13:32 COPYING
-rw-rw-r-- 1 faswad faswad 218 Nov 28 13:32 DECOMPOSITIONS_ASYM
-rw-rw-r-- 1 faswad faswad 254 Nov 28 13:32 .gitignore
-rw-rw-r-- 1 faswad faswad 5296 Nov 28 13:32 INSTALL
drwxrwxr-x 2 faswad faswad 4096 Nov 28 13:32 jl
-rwxr-xr-x 1 faswad faswad 258 Nov 28 13:32 julia
-rwxr-xr-x 1 faswad faswad 123 Nov 28 13:32 ktop
drwxrwxr-x 4 faswad faswad 4096 Nov 28 13:32 lib
drwxrwxr-x 2 faswad faswad 12288 Nov 28 13:32 m
-rw-rw-r-- 1 faswad faswad 39712 Nov 28 13:32 main.stu
-rw-rw-r-- 1 faswad faswad 12968 Nov 28 13:32 Makefile.old
-rwxr-xr-x 1 faswad faswad 4180 Nov 28 13:32 matlab
-rwxr-xr-x 1 faswad faswad 742 Nov 28 13:32 mns
-rwxr-xr-x 1 faswad faswad 1343 Nov 28 13:32 octave
drwxrwxr-x 3 faswad faswad 4096 Nov 28 13:32 pl
-rw-rw-r-- 1 faswad faswad 176 Nov 28 13:32 PLOTS
-rw-rw-r-- 1 faswad faswad 46 Nov 28 13:32 PLOTS_ASYM
-rw-rw-r-- 1 faswad faswad 14 Nov 28 13:32 PLOTS_SQUARE
-rw-rw-r-- 1 faswad faswad 79 Nov 28 13:32 PLOTS_TIME
-rw-rw-r-- 1 faswad faswad 857 Nov 28 13:32 PLOTTING
-rw-rw-r-- 1 faswad faswad 3601 Nov 28 13:32 README
-rw-rw-r-- 1 faswad faswad 682 Nov 28 13:32 runtime.source
-rw-rw-r-- 1 faswad faswad 356 Nov 28 13:32 SCATTERS
drwxrwxr-x 2 faswad faswad 4096 Nov 28 13:32 sh
-rw-rw-r-- 1 faswad faswad 248 Nov 28 13:32 STATISTICS
-rwxr-xr-x 1 faswad faswad 2118 Nov 28 13:32 status
-rw-rw-r-- 1 faswad faswad 14726 Nov 28 13:32 TODO

[farocy79]

the output for the file is
cat /tmp/m.degree.enron.log

                        < M A T L A B (R) >
              Copyright 1984-2016 The MathWorks, Inc.
               R2016b (9.1.0.441655) 64-bit (glnxa64)
                         September 7, 2016

Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/konect-toolbox/m
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/matlab_bgl
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/wafo-statistics
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/wafo-misc
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/konect-toolbox/m
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/matlab_bgl
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/wafo-statistics
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/wafo-misc

For online documentation, see http://www.mathworks.com/support
For product information, visit www.mathworks.com.

Undefined function or variable 'konect_consts'.

Error in degree (line 37)
consts = konect_consts();

=== FINISHED ===

[kunegis]

Hi Did you follow all steps from the installation instructions: https://github.com/kunegis/konect-analysis/blob/master/INSTALL In particular, step number (4) consists in linking several other directories into konect-analysis. I see that you're missing at least konect-toolbox. Best Jérôme

…

On 28/11/16 20:17, farocy79 wrote: The files is there total 276 drwxrwxr-x 8 faswad faswad 4096 Nov 28 13:32 . drwxrwxr-x 7 faswad faswad 4096 Nov 28 14:14 .. drwxrwxr-x 2 faswad faswad 4096 Nov 28 13:32 c -rw-rw-r-- 1 faswad faswad 49000 Nov 28 13:32 colormap -rw-rw-r-- 1 faswad faswad 35147 Nov 28 13:32 COPYING -rw-rw-r-- 1 faswad faswad 218 Nov 28 13:32 DECOMPOSITIONS_ASYM -rw-rw-r-- 1 faswad faswad 254 Nov 28 13:32 .gitignore -rw-rw-r-- 1 faswad faswad 5296 Nov 28 13:32 INSTALL drwxrwxr-x 2 faswad faswad 4096 Nov 28 13:32 jl -rwxr-xr-x 1 faswad faswad 258 Nov 28 13:32 julia -rwxr-xr-x 1 faswad faswad 123 Nov 28 13:32 ktop drwxrwxr-x 4 faswad faswad 4096 Nov 28 13:32 lib drwxrwxr-x 2 faswad faswad 12288 Nov 28 13:32 m -rw-rw-r-- 1 faswad faswad 39712 Nov 28 13:32 main.stu -rw-rw-r-- 1 faswad faswad 12968 Nov 28 13:32 Makefile.old -rwxr-xr-x 1 faswad faswad 4180 Nov 28 13:32 matlab -rwxr-xr-x 1 faswad faswad 742 Nov 28 13:32 mns -rwxr-xr-x 1 faswad faswad 1343 Nov 28 13:32 octave drwxrwxr-x 3 faswad faswad 4096 Nov 28 13:32 pl -rw-rw-r-- 1 faswad faswad 176 Nov 28 13:32 PLOTS -rw-rw-r-- 1 faswad faswad 46 Nov 28 13:32 PLOTS_ASYM -rw-rw-r-- 1 faswad faswad 14 Nov 28 13:32 PLOTS_SQUARE -rw-rw-r-- 1 faswad faswad 79 Nov 28 13:32 PLOTS_TIME -rw-rw-r-- 1 faswad faswad 857 Nov 28 13:32 PLOTTING -rw-rw-r-- 1 faswad faswad 3601 Nov 28 13:32 README -rw-rw-r-- 1 faswad faswad 682 Nov 28 13:32 runtime.source -rw-rw-r-- 1 faswad faswad 356 Nov 28 13:32 SCATTERS drwxrwxr-x 2 faswad faswad 4096 Nov 28 13:32 sh -rw-rw-r-- 1 faswad faswad 248 Nov 28 13:32 STATISTICS -rwxr-xr-x 1 faswad faswad 2118 Nov 28 13:32 status -rw-rw-r-- 1 faswad faswad 14726 Nov 28 13:32 TODO — You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHub <#2 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIHey17XO3g-Ip742w-zFmyTkZLuje_rks5rCyjYgaJpZM4K-FdB>.

[farocy79]

Yes I did that and I have no issuer when I did it, but to make sure I'll repeat the steps again, thank you for your quick response

[farocy79]

I did, and it showing same error,

sudo nice ./mns @network.enron
[sudo] password for faswad:

dat/statistic.format.enron <uni/out.enron network=enron: sh/network-format
dat/statistic.weights.enron <uni/out.enron network=enron: sh/network-weights
dat/info.enron <uni/out.enron network=enron: sh/network-info
MATLABPATH: printf "$PWD/m/:$PWD/konect-toolbox/m:$PWD/lib/:$PWD/lib/matlab_bgl/:$PWD/lib/wafo-statistics/:$PWD/lib/wafo-misc/:$PWD/lib/gridxy"
network=enron: ./octave m/statistic_size.m
/tmp/o.statistic_size.enron.log
network=enron: ./octave m/statistic_lines.m
/tmp/o.statistic_lines.enron.log
network=enron: ./octave m/check.m && echo OK >dat/check.$network
/tmp/o.check.enron.log
dat/networks.list: sh/mkdatasetlist
Building dat/networks.asc
dat/NETWORKS_SQUARE: grep -E " (a|)sym " dat/networks.asc | cut -f1 -d ' '
dat/NETWORKS_ASYM: grep -E " asym " dat/networks.asc | cut -f1 -d ' '
dat/NETWORKS_TIME: grep ' t ' dat/networks.asc | cut -d ' ' -f 1
dat/dep.network.enron network=enron: sh/dep-network
network=enron: ./matlab m/degree.m
/tmp/m.degree.enron.log
main.stu:1106:1: file plot/degree.a.enron.eps was not built by command
main.stu:1104:20: plot/degree.a.enron.eps is needed by @degree.enron
dat/dep.network.enron:1:1: @degree.enron is needed by [dat/dep.network.enron]
main.stu:40:38: [dat/dep.network.enron] is needed by @network.enron

[farocy79]

It seems some packages are not support anymore like loglog
cat /tmp/m.degree.enron.log

                        < M A T L A B (R) >
              Copyright 1984-2016 The MathWorks, Inc.
               R2016b (9.1.0.441655) 64-bit (glnxa64)
                         September 7, 2016

Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/matlab_bgl
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/wafo-statistics
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/wafo-misc
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/matlab_bgl
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/wafo-statistics
Warning: Name is nonexistent or not a directory:
/home/faswad/work/konect-analysis/lib/wafo-misc

For online documentation, see http://www.mathworks.com/support
For product information, visit www.mathworks.com.

network =

enron

Degree distribution...
Error using loglog
This functionality is no longer supported under the -nojvm startup option. For
more information, see "Changes to -nojvm Startup Option" in the MATLAB Release
Notes. To view the release note in your system browser, run
web('http://www.mathworks.com/help/matlab/release-notes.html#btsurqv-6',
'-browser').

Error in degree_print (line 48)
loglog(ra, fq, point_style, 'Color', colors.(type), 'MarkerSize', marker_size);

Error in degree (line 165)
degree_print(A_x + A_x', power(1), xmin(1), pvalue(1), 'Degree (d)', 'a');

=== FINISHED ===

[kunegis]

Hi KONECT Analysis was developed using version 2009B of Matlab :/ We have not tried it with newer versions, and given that the Matlab language is not standardized and proprietary, I wouldn't be surprised if the API of the loglog() function has changed. The same probably also goes for other functions. You may try to adapt the KONECT code to newer Matlab versions, if you know enough Matlab, or you may try to find an old version of Matlab, but I have no idea where such a version could be found. The inconveniences of proprietary software, indeed. If you are lucky, there may be a compatibility option in newer Matlab versions, but I have not heard of such a thing. Alternatively, you can also try to switch from Matlab to Octave (in line 1106 of main.stu), but then you'll probably get other errors. I'm afraid that's as much as I can help you with here. Best Jérôme

…

On 28/11/16 20:29, farocy79 wrote: It seems some packages are not support anymore like loglog cat /tmp/m.degree.enron.log |< M A T L A B (R) > Copyright 1984-2016 The MathWorks, Inc. R2016b (9.1.0.441655) 64-bit (glnxa64) September 7, 2016 | Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/matlab_bgl Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/wafo-statistics Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/wafo-misc Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/matlab_bgl Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/wafo-statistics Warning: Name is nonexistent or not a directory: /home/faswad/work/konect-analysis/lib/wafo-misc For online documentation, see http://www.mathworks.com/support For product information, visit www.mathworks.com <http://www.mathworks.com>. network = enron Degree distribution... Error using loglog This functionality is no longer supported under the -nojvm startup option. For more information, see "Changes to -nojvm Startup Option" in the MATLAB Release Notes. To view the release note in your system browser, run web('http://www.mathworks.com/help/matlab/release-notes.html#btsurqv-6', '-browser'). Error in degree_print (line 48) loglog(ra, fq, point_style, 'Color', colors.(type), 'MarkerSize', marker_size); Error in degree (line 165) degree_print(A_x + A_x', power(1), xmin(1), pvalue(1), 'Degree (d)', 'a'); === FINISHED === — You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHub <#2 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIHey5YeOLuSFEGv8xJANASY2buaC1O9ks5rCyuegaJpZM4K-FdB>.

[farocy79]

I understand, I will try to find a way to fix the problem, and I really appropriate your help, I believe that your project is very helpful and I wish the best for you. Thank you again