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amazon-s3-plugin-for-pytorch

ankh

Ankh: Optimized Protein Language Model

arbie_receptionist_robot

Receptionist Robot - Facial recognition; speech synthesis/comprehension; database access

deal

Inductive link prediction using Pytorch Geometric

drawio

Source to app.diagrams.net

eeg_persistent_homology

A method for generating persistent homology features for EEG (time-series) data for use in a machine learning model

elasticsearch

Elasticsearch with highlighter plugin

elasticsearch_fasttext_trainer

Train a FastText embedding model from an elasticsearch field (CPU only)

elasticsearch_keyword_extractor

- Script for extracting (keywords, contexts and keyword-offsets) and re-indexing (keywords, contexts and keyword-offsets) into either ES or MongoDB

flair

A very simple framework for state-of-the-art Natural Language Processing (NLP)

format_lint_hook

An example of using Python's precommit hooks

gatk

Official code repository for GATK versions 4 and up

genomic-data-science-jhu

Genomics data science specialization (John Hopkins University)

glow

An open-source toolkit for large-scale genomic analysis

google_vision_object_detection_example

- Example script for using the google vision API for object detection

gymnome-assembly

hail

Scalable genomic data analysis.

imagenet-to-tfrecord

Convert ImageNet dataset to Tf-Record format

infranodus

A Node.Js / Neo4J tool that translates words and relations into network graphs and shows you how it all connects.

intellij-community

IntelliJ IDEA Community Edition

k3d_bootstrap

kubernetes-hdfs

Repository holding configuration files for running an HDFS cluster in Kubernetes

local_kubeflow

Local Kubeflow/KFP deployments and examples pipelines

maka

A set of python classes to retrieve information from the Microsoft Academic Knowledge API

mask_rcnn

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

ncbi_taxonomy_tree

NCBI taxonomy tree in-memory mapping

neuraloverlap

Embedding genomic sequence reads into Euclidean space for efficient NN search

procrustes

Python library for finding the optimal transformation(s) that makes two matrices as close as possible to each other.

procrustes-analysis

- Implementations for computing optimal solutions to Procrustes problems

reads2variants

Convert NGS reads to analysis ready variants with GATK's ReadsPipelineSpark