Comments (6)
Coo, I'll make a branch today and implement it!
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Possible semantic issue (feel free to disregard, but I need to write it down somewhere)-- FullModel
is going to became an invalid name at any point when anyone adds anything new to any other model. We should really try to assign some quality that describes it properly. For me it now combines something like GenomicModel
and StandardizedMetabolitesModel
. But that sounds just bad.
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I agree for the most part. I think LinearModel
, CoupledLinearModel
and SBMLModel
are well named, but this one is tricker... it doesn't help that it's so close to SBMLModel
in terms of content. Although it is meant to store any kind of cobra model [json, mat, xml, yml] and keep all the "extra" information, e.g. grrs.
I could come around to GenomeModel
like you suggested... Or StandardGenomeModel
or StandardModel?
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👍🏼 for StandardModel
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JK, fixed in #53 :)
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Also, changing the name to StandardModel
solves my minor issue in #38
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Related Issues (20)
- Add support for ME models HOT 4
- Drop OSQP and use Clarabel instead for QPs HOT 4
- tINIT algorithm HOT 7
- Parse common attributes from notes HOT 3
- Collect package download information HOT 5
- .mat model not loading HOT 6
- Conversion from MATModel produces opaque errors if fields are missing HOT 3
- Incorrect gene reaction rule parsing HOT 7
- JSON model format incompatible with escher HOT 8
- Mapping through delimited IDs into inner models HOT 2
- `removeReaction!` etc. doesn't update all fields in a `CoreModel` HOT 1
- Pretty print model semantics HOT 2
- Check that function return types inferred in documentation make sense HOT 2
- `check_duplicate_reaction` does not consider reaction directionality HOT 2
- Implement Tables.jl interface for `ModelWithResult` HOT 1
- Document forwarding the `--project` exeflag with ClusterManagers HOT 1
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- inconsistent parsing of subsystems HOT 9
- JUMP time limit HOT 5
- Genes not parsed if they have an "@" symbol HOT 1
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