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blat-server-docker

cmap-js

Display and compare biological maps (genetic, physical, cytogenetic, genomic, linkage groups, chromosomes, scaffolds).

coge-api

A high-level Java API for retrieving, adding, updating and deleting CoGe data via its REST API. Uses Resty.

cvitjs

CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.

datastore-public

A web-based file browser for iRODS with metadata-based templating.

dscensor

Visualization and Organization for Assembly and Annotation Data

federation

Code and issues around federation

gcvit

CViT based tool for visualising VCF files.

gruence

consistency and other filter properties in gene families

integrate-medtr-hapmap

Repository for managing tasks related to integrating the Medicago HapMap data into LegFed

interface-and-usability

Repo for tracking issues on LegFed interface and usability

jbrowse-docker-slim

Minimal Docker image containing JBrowse JavaScript components + NGINX HTTP server

legfed-django-site

Django CMS www.LegumeFederation.org

legfed_gene_families

A repository for managing tasks relating to the production of gene families for use by the Legume Federation

legfed_theme

drupal theme for legfed website

legumefederation.org

issues pertaining to the project website

lorax

a web server that "speaks for the (phylogenetic) trees"

meetings

Planning for meeting talks and posters

meta_iron

a tool that flattens and regularizes metadata

ontology_search

Tripal extension module that carries out hierarchical ontology searches

outreach

Tracking activities related to interfacing with other groups (primarily users and non-funded federation members)

qoopty

A vehicle for queue-backed web services

qtl_loader.v2

The QTL loading scripts for v2 of the QTL module

seq2tree

A Tripal module for placing sequence on a phylogenetic tree.

supervisor

Supervisor process control system for UNIX

traitloader

Perl loading scripts for QTL, map and marker data designed for Tripal/chado

traits

Handling of traits within Legume Federation software components, and recommendations to data curators.

tripal

The Tripal "core" package, a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. Please use the Drupal project's issue queue at https://www.drupal.org/project/issues/tripal for bug reports and requests.

tripal_blast

LegFed development repository for Tripal Blast. For official releases & documentation go to drupal.org

tripal_trait

The LegumeFederation version of the Tripal QTL module.