leonfodoulian Goto Github PK

bmrm

R package implementing Bundle Method for Regularized Risk Minimization

cavidaga.github.io

clustree

Visualise Clusterings at Different Resolutions

contrastive

Contrastive PCA

dropest

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

indrops

Pipeline for processing inDrops sequencing data

kallisto

Near-optimal RNA-Seq quantification

m3drop

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

pagoda2

R package for analyzing and interactively exploring large single-cell RNA-seq datasets

paired-end_barcode_splitter

r-ladies-ml-1

:star: Files for my R-Ladies ML workshop - Supervised Learning 101 :star:

rslalom

slalom - an R package implementing a factorial single cell latent variable model

sars_cov_2_anosmia

sc3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

scrattch.hicat

Hierarchical, iterative clustering for analysis of transcriptomics data in R

scrattch.vis

scRNA-seq data visualization from scrattch

seurat

R toolkit for single cell genomics

umi-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

urd

URD - Reconstruction of Branching Developmental Trajectories

uwot

An R package implementing the UMAP dimensionality reduction method.

zinbwave

Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave