MSnSet NA / Plot2D exception handler about 2017-spatialmap-robin

[lgatto]

This is to be expected due to the experimental design. That data is full of missing values, and there's nothing left after filtering. Not all the datasets in pRolocdata are actually spatial proteomics data (havugimana2012 is a interaction data). I would suggest you use only the following data

E14TG2aR                LOPIT experiment on Mouse E14TG2a Embryonic
                        Stem Cells from Breckels et al. (2016)
E14TG2aS1               LOPIT experiment on Mouse E14TG2a Embryonic
                        Stem Cells from Breckels et al. (2016)
E14TG2aS1goCC           LOPIT experiment on Mouse E14TG2a Embryonic
                        Stem Cells from Breckels et al. (2016)
E14TG2aS1yLoc           LOPIT experiment on Mouse E14TG2a Embryonic
                        Stem Cells from Breckels et al. (2016)
E14TG2aS2               LOPIT experiment on Mouse E14TG2a Embryonic
                        Stem Cells from Breckels et al. (2016)
HEK293T2011             LOPIT experiment on Human Embryonic Kidney
                        fibroblast HEK293T cells from Breckels et al.
                        (2013)
HEK293T2011goCC         LOPIT experiment on Human Embryonic Kidney
                        fibroblast HEK293T cells from Breckels et al.
                        (2013)
HEK293T2011hpa          LOPIT experiment on Human Embryonic Kidney
                        fibroblast HEK293T cells from Breckels et al.
                        (2013)
andreyev2010            Six sub-cellular fraction data from mouse
                        macrophage-like RAW264.7 cells from Andreyev et
                        al. (2009)
andreyev2010activ       Six sub-cellular fraction data from mouse
                        macrophage-like RAW264.7 cells from Andreyev et
                        al. (2009)
andreyev2010rest        Six sub-cellular fraction data from mouse
                        macrophage-like RAW264.7 cells from Andreyev et
                        al. (2009)
andy2011                LOPIT experiment on Human Embryonic Kidney
                        fibroblast HEK293T cells from Breckels et al.
                        (2013)
andy2011goCC            LOPIT experiment on Human Embryonic Kidney
                        fibroblast HEK293T cells from Breckels et al.
                        (2013)
andy2011hpa             LOPIT experiment on Human Embryonic Kidney
                        fibroblast HEK293T cells from Breckels et al.
                        (2013)
at_chloro               The AT_CHLORO data base
dunkley2006             LOPIT data from Dunkley et al. (2006)
foster2006              PCP data from Foster et al. (2006)
groen2014cmb            LOPIT experiments on Arabidopsis thaliana
                        roots, from Groen et al. (2014)
groen2014r1             LOPIT experiments on Arabidopsis thaliana
                        roots, from Groen et al. (2014)
groen2014r1goCC         LOPIT experiments on Arabidopsis thaliana
                        roots, from Groen et al. (2014)
groen2014r2             LOPIT experiments on Arabidopsis thaliana
                        roots, from Groen et al. (2014)
groen2014r3             LOPIT experiments on Arabidopsis thaliana
                        roots, from Groen et al. (2014)
hall2009                LOPIT data from Hall et al. (2009)
hyperLOPIT2015          Protein and PMS-level hyperLOPIT datasets on
                        Mouse E14TG2a embryonic stem cells from
                        Christoforou et al. (2016).
hyperLOPIT2015goCC      Protein and PMS-level hyperLOPIT datasets on
                        Mouse E14TG2a embryonic stem cells from
                        Christoforou et al. (2016).
hyperLOPIT2015ms2       Protein and PMS-level hyperLOPIT datasets on
                        Mouse E14TG2a embryonic stem cells from
                        Christoforou et al. (2016).
hyperLOPIT2015ms2psm    Protein and PMS-level hyperLOPIT datasets on
                        Mouse E14TG2a embryonic stem cells from
                        Christoforou et al. (2016).
hyperLOPIT2015ms3r1     Protein and PMS-level hyperLOPIT datasets on
                        Mouse E14TG2a embryonic stem cells from
                        Christoforou et al. (2016).
hyperLOPIT2015ms3r1psm
                        Protein and PMS-level hyperLOPIT datasets on
                        Mouse E14TG2a embryonic stem cells from
                        Christoforou et al. (2016).
hyperLOPIT2015ms3r2     Protein and PMS-level hyperLOPIT datasets on
                        Mouse E14TG2a embryonic stem cells from
                        Christoforou et al. (2016).
hyperLOPIT2015ms3r2psm
                        Protein and PMS-level hyperLOPIT datasets on
                        Mouse E14TG2a embryonic stem cells from
                        Christoforou et al. (2016).
hyperLOPIT2015ms3r3     Protein and PMS-level hyperLOPIT datasets on
                        Mouse E14TG2a embryonic stem cells from
                        Christoforou et al. (2016).
hyperLOPITU2OS2017      2017 hyperLOPIT on U2OS cells
hyperLOPITU2OS2017b     2017 hyperLOPIT on U2OS cells
itzhak2016stcSILAC      Data from Itzhak et al. (2016)
mulvey2015norm          Data from Mulvey et al. 2015
nikolovski2012          Meta-analysis from Nikolovski et al. (2012)
nikolovski2012imp       Meta-analysis from Nikolovski et al. (2012)
nikolovski2014          LOPIMS data from Nikolovski et al. (2014)
rodriguez2012r1         Spatial proteomics of human inducible
                        goblet-like LS174T cells from Rodriguez-Pineiro
                        et al. (2012)
rodriguez2012r2         Spatial proteomics of human inducible
                        goblet-like LS174T cells from Rodriguez-Pineiro
                        et al. (2012)
rodriguez2012r3         Spatial proteomics of human inducible
                        goblet-like LS174T cells from Rodriguez-Pineiro
                        et al. (2012)
stekhoven2014           Data from Stekhoven et al. 2014
tan2009r1               LOPIT data from Tan et al. (2009)
tan2009r1goCC           LOPIT data from Tan et al. (2009)
tan2009r2               LOPIT data from Tan et al. (2009)
tan2009r3               LOPIT data from Tan et al. (2009)
trotter2010             LOPIT data sets used in Trotter et al. (2010)
trotter2010shallow      LOPIT data sets used in Trotter et al. (2010)
trotter2010steep        LOPIT data sets used in Trotter et al. (2010)