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help for gff format about bioawk HOT 2 CLOSED

lh3 avatar lh3 commented on July 17, 2024
help for gff format

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Comments (2)

dariober avatar dariober commented on July 17, 2024

Also, if I'm not mistaken the fields "strand" and "filter" (aka frame?) are swapped. I think the fix is in replacing the line in addon.c

{"gff", "seqname", "source", "feature", "start", "end", "score", "filter", "strand", "group", "attribute", NULL}

with

 {"gff", "seqname", "source", "feature", "start", "end", "score", "strand", "filter", "attribute", NULL}

from bioawk.

sahilseth avatar sahilseth commented on July 17, 2024

@dariober yes, it seems score and filter are swapped. Submit a pull request, maybe?

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