lieberinstitute Goto Github PK
Name: Lieber Institute for Brain Development
Type: Organization
Location: Baltimore, MD
Blog: www.libd.org
Name: Lieber Institute for Brain Development
Type: Organization
Location: Baltimore, MD
Blog: www.libd.org
10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC
AANRI Phase 1
BiocMAP-processed data for Price, Collado-Torres et al, Genome Biology 2019 https://doi.org/10.1186/s13059-019-1805-1. Used as an example for BiocMAP.
Epigenome-wide analysis of DNA methylation from Alzheimer's patients and unaffected controls
Common annotation files we re-use in projects
Data and code from Ming et al, Nature Medicine, 2016 on dissecting GWAS signal from the 10q24.32 region
Brain data portal at LIBD. Not only brain data.
Our typical analysis steps for WGBS data, starting from FASTQ reads and ending with the construction of bsseq objects. Created using nextflow
Scripts for the WGCNA paper: Schizophrenia risk genes converge into divergent co-expression pathways reflecting brain development across regions and age periods
A package to annotate and visualize expression of candidate BrainFlow probe sequences.
Characterizing the nuclear and cytoplasmic transcriptomes in developing and mature human cortex uncovers new insight into psychiatric disease gene regulation
code from brainseq phase 1 paper
BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium
Matching genotype and RNA-seq data to conform IDs of brain samples
Ca
Deep learning predicts DNA methylation regulatory variants in specific brain cell types and enhances fine mapping for brain disorders
MATLAB and R scripts to process microscopy image stacks for immuno stained oxytocin positive neurons
Calcium Imaging Real-time MATLAB Interactive Toolbox
dbFinder code
Contains analysis for the lute software paper
Deconvolution commentary related to R01MH123183
Helper Functions for LIBD Deconvolution
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.