Something About Zdock results about membrane_docking

[brianjimenez]

Clustering in LightDock is intra-swarm and not inter-swarm, which means that several similar structures are to be found in the final pool of predictions as neighboring swarms might score similar and predict poses in the same binding location. Said so, the clustering method used by ZDOCK (referred as pruning as in [1]) depends on a user selected threshold which, to our knowledge, has not been disclosed. Additionally, it seems there is no clustering mechanism implemented in the ZDOCK server so far (https://academic.oup.com/bioinformatics/article/30/12/1771/381628).
Please don't hesitate to reopen the issue if you have any other question about the protocol.

[amjjbonvin]

As an additional comment, I think it is good practice to actually reveal your identify when commenting / opening issues (your username @yymyymyym is rather cryptic...) . Open science is not only about data / software, but also about the discussion around it.