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bacteriatool

bacteriatool is a corpus of python script to deal with a lot of problem about bacteria genome analysis. you can use it to manage the data created by resfinder.py(https://bitbucket.org/genomicepidemiology/resfinder.git) to build a csv matrix about the presence of drug resistance genes in different individuals by Resfinder2csv.py. you can use it to manage the data created by toxicity database :VFDB by blast2.7(default output) to build a csv matrix about the presence of drug toxicity genes in different individuals by VFDB2csv.py. you can use it to extract the information like "organism","isolation_source","host","country","lat_lon","collection_date","sample_name" of GBK(GCA) file form NCBI and create a csv matrix of your information.

brusholclasscxey

超星尔雅网课自动搞起来

cov2gff

Covmonkey2gff pipeline for annotation of Sars-cov-2

drawyourlittletree

画一棵只属于你的小樱花吧

easy-python-scripy

easy python scripy

gearrecout

lipingfangs.github.io

panlineal

Panlineal is capable of generating Vgs from multiple genome alignments in form of lineal pan-genome. Combining short reads data, it can also detect the the allelism conduced by PAVs combinations of vast samples in a species.

polydetecter

recomgetout

Shield the recombint region of your sequence base on the result of FastGear

riceorthoblast

The main function of the Pipeline is to predict and control the quality of homologous loci for sequences of contig, scaffold, and fit assembly levels by using known gene libraries of proteins of known species.

toolforgwas

My little tools for pan-GWAS

vap

a programme for visualization of short sequence alignment and path navigation in graphical pan-genome