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acme-tiny

A tiny script to issue and renew TLS certs from Let's Encrypt

alphafold

Open source code for AlphaFold.

angel

Robust Open Reading Frame prediction (ANGLE re-implementation)

ant-design-pro-layout

🏂 Ant-design-pro layout repository

apexcharts.js

📊 Interactive JavaScript Charts built on SVG

augustus

Genome annotation with AUGUSTUS

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

axios

Promise based HTTP client for the browser and node.js

bamtools

C++ API & command-line toolkit for working with BAM data

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees

bedtools2

A powerful toolset for genome arithmetic.

bigsdb

Bacterial Isolate Genome Sequence Database

bigsi

BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data

bio-chado-schema

A standard DBIx::Class layer for the Chado database schema. Bootstrapped and updated using DBIx::Class::Schema::Loader.

bio-pipeline

My collection of light bioinformatics analysis pipelines for specific tasks

blasr

BLASR: The PacBio® long read aligner

blastjs

a BLAST+ wrapper for Node.js

blend4php

A PHP API for interacting with Galaxy

bootstrap

The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

bootstrap-table

An extended Bootstrap table with radio, checkbox, sort, pagination, and other added features. (supports twitter bootstrap v2 and v3)

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

canto

The Pombase community curation tool

canu

A single molecule sequence assembler for genomes large and small.

cdhit

Automatically exported from code.google.com/p/cdhit

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing sequencing data

chado-tools

Tools for accessing CHADO databases.

create-react-app

Set up a modern web app by running one command.

curve

cytoscape.js

Graph theory (a.k.a. network) library for analysis and visualisation (compatible with CommonJS/Node.js/io.js, AMD/Require.js, jQuery, npm, Bower, spm, jspm, Meteor/Atmosphere, and plain JS/JavaScript)