liuyanbioinfo Goto Github PK

bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers

blasr

This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappear at any time.

build-your-own-x

Master programming by recreating your favorite technologies from scratch.

cats

cnvkit

Copy number variant detection from targeted DNA sequencing

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fgbio

Tools for working with genomic and high throughput sequencing data.

gencore

Generate consensus reads to reduce sequencing noises and remove duplications

hla

xHLA: Fast and accurate HLA typing from short read sequence data

machine-learning-deep-learning-notes

机器学习、深度学习的学习路径及知识总结

machinelearning

My blogs and code for machine learning. http://cnblogs.com/pinard

mantis

Microsatellite Analysis for Normal-Tumor InStability

pvac-seq

DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools

runjob

runjob is a program for managing a group of related jobs running on a compute cluster

svaba

Structural variation and indel detection by local assembly

transvar

TransVar - multiway annotator for precision medicine