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alphafold

Open source code for AlphaFold.

alphafold_non_docker

AlphaFold2 non-docker setup

antibody_benchmark

Antibody-Antigen Docking and Affinity Benchmark

biocode

Bioinformatics code libraries and scripts

cafa-format-check

Format checkers for CAFA predictions files

cafa2

Matlab Evaluation codes for the 2nd CAFA experiment

cafa3

University of Turku CAFA3 project

cafa_assessment_tool

Precision-Recall based assessment for CAFA

ccmgen

ccmgen-scripts

Contains plotting scripts, examples, and other small scripts relevant to CCMgen and the corresponding publication.

ccmpred

Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.

cdhit

Automatically exported from code.google.com/p/cdhit

colabfold

Making Protein folding accessible to all via Google Colab!

coursera-ng-convolutional-neural-networks

cs230-code-examples

Code examples in pyTorch and Tensorflow for CS230

cudca

CUDA implementation of the initial steps in plmDCA

deeplearning_tutorials

The deeplearning algorithms implemented by tensorflow

deepmetapsicov

Deep ResNet-based protein contact prediction

diamond

Accelerated BLAST compatible local sequence aligner.

dmpfold

Extending genome-scale de novo protein modelling coverage using iterative deep learning-based prediction of structural constraints

dncon2

Deep convolutional neural networks for protein contact map prediction

drn-pytorch

PyTorch implementation of Dilated Residual Networks for semantic image segmentation

evcouplings

Evolutionary couplings from protein and RNA sequence alignments

galaxyrefinecomplex

Refinement of protein-protein complex model structures driven by interface repacking

git_learning

hh-suite

Remote protein homology detection suite.

liuzi919.github.io

mobilepose-pytorch

Light-weight Single Person Pose Estimator

oqmrc2018

观点型问题阅读理解 challenger.ai

ouroboros

Combination of coevolutionary analysis with expectation-maximization