compile a version of UEDGE with OMFIT support on GA IRIS cluster about uedge

[llnl-fesp]

I’m working on release now but it may be a couple of days. I’ll put what I have there now, the physics packages won’t change when I finally tag a release. We still keep a basis version there but I know you mean pyUedge. I’ll let you know the modulefile in a bit. Bill From: Orso Meneghini <[email protected]> Reply-To: LLNL/UEDGE <[email protected]> Date: Thursday, October 31, 2019 at 11:03 AM To: LLNL/UEDGE <[email protected]> Cc: Bill Meyer <[email protected]>, Mention <[email protected]> Subject: [LLNL/UEDGE] compile a version of UEDGE with OMFIT support on GA IRIS cluster (#5) @llnl-fesp<https://github.com/llnl-fesp> @umansky<https://github.com/umansky> I would like to compile a version of UEDGE with the OMFIT support (e4c491f<e4c491f>) on the GA IRIS cluster. I was given access to the /fusion/projects/codes/uedge folder on IRIS, but I wanted to coordinate with before making a new directory and starting to maintain a separate version of UEDGE just for usage via OMFIT. Since @llnl-fesp<https://github.com/llnl-fesp> was very prompt in merging e4c491f<e4c491f> into master, I wonder if you could just update UEDGE on IRIS to the latest version :) Please let me know how you'd like to proceed. Thanks! — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#5?email_source=notifications&email_token=ACFEDGLLMRM7XQEKS75UQE3QRMMUZA5CNFSM4JHPDUD2YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HV4AEDA>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACFEDGPBT27BPHQTSY57PRDQRMMUZANCNFSM4JHPDUDQ>.

[llnl-fesp]

You can do a “ module load uedge/PyUEDGE/V7_08_04rc2” Bill From: Orso Meneghini <[email protected]> Reply-To: LLNL/UEDGE <[email protected]> Date: Thursday, October 31, 2019 at 11:03 AM To: LLNL/UEDGE <[email protected]> Cc: Bill Meyer <[email protected]>, Mention <[email protected]> Subject: [LLNL/UEDGE] compile a version of UEDGE with OMFIT support on GA IRIS cluster (#5) @llnl-fesp<https://github.com/llnl-fesp> @umansky<https://github.com/umansky> I would like to compile a version of UEDGE with the OMFIT support (e4c491f<e4c491f>) on the GA IRIS cluster. I was given access to the /fusion/projects/codes/uedge folder on IRIS, but I wanted to coordinate with before making a new directory and starting to maintain a separate version of UEDGE just for usage via OMFIT. Since @llnl-fesp<https://github.com/llnl-fesp> was very prompt in merging e4c491f<e4c491f> into master, I wonder if you could just update UEDGE on IRIS to the latest version :) Please let me know how you'd like to proceed. Thanks! — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#5?email_source=notifications&email_token=ACFEDGLLMRM7XQEKS75UQE3QRMMUZA5CNFSM4JHPDUD2YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HV4AEDA>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACFEDGPBT27BPHQTSY57PRDQRMMUZANCNFSM4JHPDUDQ>.

[llnl-fesp]

Do you know the status of Python3 there at GA? On Iris there isn’t even a modulefile for python3. Bill From: Orso Meneghini <[email protected]> Reply-To: LLNL/UEDGE <[email protected]> Date: Thursday, October 31, 2019 at 11:03 AM To: LLNL/UEDGE <[email protected]> Cc: Bill Meyer <[email protected]>, Mention <[email protected]> Subject: [LLNL/UEDGE] compile a version of UEDGE with OMFIT support on GA IRIS cluster (#5) @llnl-fesp<https://github.com/llnl-fesp> @umansky<https://github.com/umansky> I would like to compile a version of UEDGE with the OMFIT support (e4c491f<e4c491f>) on the GA IRIS cluster. I was given access to the /fusion/projects/codes/uedge folder on IRIS, but I wanted to coordinate with before making a new directory and starting to maintain a separate version of UEDGE just for usage via OMFIT. Since @llnl-fesp<https://github.com/llnl-fesp> was very prompt in merging e4c491f<e4c491f> into master, I wonder if you could just update UEDGE on IRIS to the latest version :) Please let me know how you'd like to proceed. Thanks! — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#5?email_source=notifications&email_token=ACFEDGLLMRM7XQEKS75UQE3QRMMUZA5CNFSM4JHPDUD2YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HV4AEDA>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACFEDGPBT27BPHQTSY57PRDQRMMUZANCNFSM4JHPDUDQ>.

[orso82]

Correct, there is no python3 installation that the computer group supports. However we support our own python3 installation for OMFIT.

[meneghini@irisc ~]$ module load omfit/unstable
[meneghini@irisc ~]$ which python3
/fusion/projects/codes/atom/omfit_py3/atom_SATURN_GCC/miniconda3/bin/python3

I will get you the forthon and mppl packages installed as part of it...

[llnl-fesp]

No need. I already have mppl and forthon installed From: Orso Meneghini <[email protected]> Reply-To: LLNL/UEDGE <[email protected]> Date: Thursday, October 31, 2019 at 1:07 PM To: LLNL/UEDGE <[email protected]> Cc: Bill Meyer <[email protected]>, Mention <[email protected]> Subject: Re: [LLNL/UEDGE] compile a version of UEDGE with OMFIT support on GA IRIS cluster (#5) Correct, there is no python3 installation that the computer group supports. However we support our own python3 installation for OMFIT. [meneghini@irisc ~]$ module load omfit/unstable [meneghini@irisc ~]$ which python3 /fusion/projects/codes/atom/omfit_py3/atom_SATURN_GCC/miniconda3/bin/python3 I will get you the forthon and mppl packages installed as part of it... — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#5?email_source=notifications&email_token=ACFEDGKKZW4SQZOF62KCAUDQRM3G7A5CNFSM4JHPDUD2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOECZCVRQ#issuecomment-548547270>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACFEDGKDOGZAWG5JXLLQ6NLQRM3G7ANCNFSM4JHPDUDQ>.

[llnl-fesp]

If you want to install them into the python3 itself be my guest. Forthon already was compatible with python3 and I just recently fixed the mppl at pypi. From: Orso Meneghini <[email protected]> Reply-To: LLNL/UEDGE <[email protected]> Date: Thursday, October 31, 2019 at 1:07 PM To: LLNL/UEDGE <[email protected]> Cc: Bill Meyer <[email protected]>, Mention <[email protected]> Subject: Re: [LLNL/UEDGE] compile a version of UEDGE with OMFIT support on GA IRIS cluster (#5) Correct, there is no python3 installation that the computer group supports. However we support our own python3 installation for OMFIT. [meneghini@irisc ~]$ module load omfit/unstable [meneghini@irisc ~]$ which python3 /fusion/projects/codes/atom/omfit_py3/atom_SATURN_GCC/miniconda3/bin/python3 I will get you the forthon and mppl packages installed as part of it... — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#5?email_source=notifications&email_token=ACFEDGKKZW4SQZOF62KCAUDQRM3G7A5CNFSM4JHPDUD2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOECZCVRQ#issuecomment-548547270>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACFEDGKDOGZAWG5JXLLQ6NLQRM3G7ANCNFSM4JHPDUDQ>.

[orso82]

@llnl-fesp both Forthon and mppl are now available with:

    module load omfit/unstable
    python3

[llnl-fesp]

Orso, I stopped by to see you but heard you weren’t feeling well. Hope you are better for your travel tomorrow. I just stopped by to have a short chat about PyUEDGE. I wanted to make sure that you knew that the variables you added to the hdf5 save file were fine for plotting but not for a restart. Using nis and ni as an example: Nis is restored and copied to ni Case is then run If the case converged, then ni is copied to nis Bill From: Orso Meneghini <[email protected]> Reply-To: LLNL/UEDGE <[email protected]> Date: Thursday, October 31, 2019 at 11:03 AM To: LLNL/UEDGE <[email protected]> Cc: Bill Meyer <[email protected]>, Mention <[email protected]> Subject: [LLNL/UEDGE] compile a version of UEDGE with OMFIT support on GA IRIS cluster (#5) @llnl-fesp<https://github.com/llnl-fesp> @umansky<https://github.com/umansky> I would like to compile a version of UEDGE with the OMFIT support (e4c491f<e4c491f>) on the GA IRIS cluster. I was given access to the /fusion/projects/codes/uedge folder on IRIS, but I wanted to coordinate with before making a new directory and starting to maintain a separate version of UEDGE just for usage via OMFIT. Since @llnl-fesp<https://github.com/llnl-fesp> was very prompt in merging e4c491f<e4c491f> into master, I wonder if you could just update UEDGE on IRIS to the latest version :) Please let me know how you'd like to proceed. Thanks! — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#5?email_source=notifications&email_token=ACFEDGLLMRM7XQEKS75UQE3QRMMUZA5CNFSM4JHPDUD2YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HV4AEDA>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACFEDGPBT27BPHQTSY57PRDQRMMUZANCNFSM4JHPDUDQ>.