lmcintosh Goto Github PK

aesthetics

A handy package to keep all my aesthetics functions in one place

annotated-papers

A short description of the papers I'm reading.

cell-classification

Scripts to classify neurons in cortical microcircuits. Written in 2010 for the MacLean lab at University of Chicago.

cell-health

Scripts for determining the health of neurons during electrophysiology. Written for the MacLean lab at University of Chicago.

cifar10

Neural network models for CS 431

cnv-finder

A ruby package for finding copy number variants in gene microarray data. Archival bioinformatics work for the Simons Center for Systems Biology at the Institute for Advanced Study, Princeton, NJ in 2009.

conv-batchnorm

Convolutional batch normalization for computing local gain normalization with translation invariant parameters.

deep-retina-tutorial

Tutorial for exploring models of retinal responses to natural scenes.

diamondhead

Script to determine if the stock market is currently over or underpriced based on historical averages, then text me the fraction of stocks to buy and cash to hold.

dotfiles

A repository of various dot files and profiles

draw_convnet

event-recognition

Code for automatically flagging (mounted) surveillance videos for new objects.

experiment-tools

Miscellaneous python tools to pre-process multielectrode array retinal recordings

functions

homepage

Personal website at www.lanemcintosh.com

hyperopt

Distributed Asynchronous Hyperparameter Optimization in Python

information-theory-toolbox

Scripts to empirically estimate mutual information and entropy between random vectors.

ipython-notebooks

A repository of my iPython notebooks; basically lab notebooks for computation!

jetpack

:fallen_leaf: useful functions and utilities for scientific python

kaggle

Repository of code used for Kaggle.com competitions

keras

Theano-based Deep Learning library (convnets, recurrent neural networks, and more).

masters-thesis

Code for simulating an adaptive, exponential integrate-and-fire neuron and analyzing its predictive power and memory.

natural-scenes

Python module for efficiently loading natural scene stimuli.

nbio228

Website for the course NBIO 228: Math Tools for Neuroscience, taught by graduate students Lane McIntosh and Kiah Hardcastle.

perception

Materials for helping teach the undergraduate class Introduction to Perception.

photo-compare

Compare two similar photos and select the best one.

pyret

Python tools for analysis of neurophysiology data

reproducing-pitkow-meister

Reproducing the results in Pitkow & Meister's 2012 paper on decorrelation and efficient coding.

retina-analysis

Functions and scripts for analyzing multielectrode array data collected from tiger salamander and rodent retina.

retina-simulation

Code for simulating the retina.