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lonsbio's Projects

10_simple_rules_analysis icon 10_simple_rules_analysis

Python scripts used to produce figures for "'Ten Simple Rules for Writing a PLOS Ten Simple Rules Article"

allsorts icon allsorts

ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier. From gene expression counts to over 18 subtypes.

biopy icon biopy

Bio-file and bio-sequence utility methods

biostrings icon biostrings

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/Biostrings.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=Biostrings.

biotool icon biotool

Proverbial biotool implemented in multiple languages

biotool-initial icon biotool-initial

Template bioinformatics script in various languages based on "Ten recommendations for creating usable bioinformatics command line software" by Torsten Seemann (http://www.gigasciencejournal.com/content/2/1/15)

bpipe-vagrant icon bpipe-vagrant

Vagrant configuration for Bpipe (https://code.google.com/p/bpipe/) development.

calc icon calc

A simple calculator for use in a git tutorial

data-shell icon data-shell

Software Carpentry introduction to the shell for novices.

dwgsim icon dwgsim

Whole Genome Simulator for Next-Generation Sequencing

fastqe icon fastqe

Redirection to the new FASTQE repo.

git-novice icon git-novice

Software Carpentry introduction to Git for novices.

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