lordzappo Goto Github PK

airflow

AirFlow is a system to programmatically author, schedule and monitor data pipelines.

bam-readcount

count DNA sequence reads in BAM files

basicfiltering

Basic filtering scripts for various mutation calling tools

bg7

bacterial genome annotation system

catsvsdogs

This just classifies cats vs. dogs, as per https://www.kaggle.com/c/dogs-vs-cats-redux-kernels-edition/data

cmo

Modular bioinformatics pipelines for the CMO

dnanexus_accuracy_evaluator

facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

fireworks

The Fireworks Workflow Management Repo.

genologics-lims-python

Python interface to GenoLogics LIMS via its REST API.

hotspots

Identifying recurrent mutations in cancer

old_roslin

prism prototype

replace_allele_counts

This repo helps to replace the allele counts in maf file after genotyping

roslin

Roslin is a portable and reproducible workflow infrastructure for Cancer Genomic Sequencing Analysis

roslin-core

Core of the Roslin pipeline

rowing-mkr1010

Arduino Rowing Computer with MKR1010

test_dnanexus_app

toil

A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python

treeomics

Decrypting somatic mutation patterns to reveal the evolution of cancer

variant-filter

A false-positive filter for variants called from massively parallel sequencing

wes-filters

Filters for false-positive mutation calls in whole-exome sequencing

wooey

A Django app that creates automatic web UIs for Python scripts.