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loukesio

ย Hi, I'm Loukas! ๐Ÿ‘‹ย 

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I am a data scientist working in the interface between mathematical modelling ๐Ÿ‘จโ€๐Ÿ”ฌ and bioinformatics ๐Ÿ‘จโ€๐Ÿ’ป, and I love coding in R, python and Javascript. I am currently a senior bioinformatics scientist at the Rainey Lab at the Max Planck Institute for Evolutionary Biology in Plรถn, Germany. I am passionate about making science open, so I am sharing every bit of helpful code I write.


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Loukas Theodosiou's Projects

30-days-of-javascript icon 30-days-of-javascript

30 days of JavaScript programming challenge is a step-by-step guide to learn JavaScript programming language in 30 days. This challenge may take more than 100 days, please just follow your own pace.

30daymapchallenge icon 30daymapchallenge

A repository for the #30DayMapChallenge 2021. If the code does compile correctly or if you see an error, please let me know.

bamstats_app icon bamstats_app

bamstats is a user-friendly Shiny application designed to visualize and analyze coverage data from BAM (Binary Alignment/Map) files across specific genes. This app provides an intuitive interface for exploring and understanding the coverage patterns within genes, enabling researchers to identify potential issues or regions of interest.

barbac icon barbac

๐›๐š๐ซ๐›๐š๐œ is an R package designed for the ๐˜ฆ๐˜น๐˜ต๐˜ณ๐˜ข๐˜ค๐˜ต๐˜ช๐˜ฐ๐˜ฏ of barcode sequences. It efficiently ๐˜ค๐˜ญ๐˜ถ๐˜ด๐˜ต๐˜ฆ๐˜ณ๐˜ด these sequences and provides functionality for the calculation and visualization of ๐˜ต๐˜ช๐˜ฎ๐˜ฆ ๐˜ด๐˜ฆ๐˜ณ๐˜ช๐˜ฆ๐˜ด trajectories of the barcoded data.

barcosim icon barcosim

BarcoSim, a specialized R package designed for simulating barcoded amplicon sequences. Whether you're testing algorithms or forecasting experimental outcomes, BarcoSim provides a robust framework to mimic real-world sequencing scenarios, ensuring preparedness and enhancing the efficiency of your genomic projects."

bartender-1.1 icon bartender-1.1

This bartender version could handle arbitrary length of barcode

g3 icon g3

A developmental version of a graph to compare genomes

ggvolc icon ggvolc

๐ ๐ ๐ฏ๐จ๐ฅ๐œ effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of interest with unprecedented ease. With just a single line of code, visualize complex datasets, gaining deeper insights and simplifying data representation

ggvolcano icon ggvolcano

The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient color volcano plot(`gradual_volcano`) and GO term volcano plot(`term_volcano`).

grate icon grate

An R package for calculating r and K from growth curves

levenr icon levenr

Simple Levenshtein alignment and distance calculation

ltc_palettes icon ltc_palettes

"ltc_palettes: Tailored for data visualization enthusiasts, ltc_palettes is an R package that offers a curated collection of color palettes. Crafted to enhance clarity and impact, these palettes ensure that your visual representations not only communicate data effectively but also aesthetically

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