lseu-994 Goto Github PK
Name: Lucas
Type: User
Bio: Engineer, neurosciences, Deep Learning, image analysis and more.
Location: France
Lucas's Projects
3d-reconstruction-with-deep-learning-methods
List of projects for 3d reconstruction
ark-analysis
Integrated pipeline for multiplexed image analysis
awesome-biological-image-analysis
A curated list of softwares, tools, pipelines, plugins etc. for image analysis related to biological questions.
bg-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
bioml
A collection of repository about Articles, softwares, tools, pipelines, plugins and more, for Biology research.
brainreg
Automated 3D brain registration with support for multiple species and atlases.
brainrender
a python based software for visualization of neuroanatomical and morphological data.
cellfinder
Automated 3D cell detection and registration of whole-brain images
cellpose
a generalist algorithm for cellular segmentation
imagepy
Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
lseu-994
n2v
This is the implementation of Noise2Void training.
rivuletpy
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
rnaseq-analysis
a Personal RNAseq analysis Repository.
slicereg
A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
squidpy
Spatial Single Cell Analysis in Python
vampire-analysis
VAMPIRE (Visually Aided Morpho-Phenotyping Image Recognition) analysis quantifies and visualizes heterogeneity of cell and nucleus morphology.
vampire_open
open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition
zerocostdl4mic
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
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