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allday

NFL ALL DAY

bidsqc

Scripts to batch convert dicoms to BIDS in parallel on an HPC environment, followed by a file check

bokeh

Interactive Data Visualization in the browser, from Python

bokeh-notebooks

Interactive Web Plotting with Bokeh in IPython notebook

brainbox

BrainBox is a web application that lets you annotate and segment 3D brain imaging data in real time, collaboratively.

brainprint

Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)

cloudknot

A python library to run your existing code on AWS Batch

course-v3

The 3rd edition of course.fast.ai

cwltool

Common Workflow Language reference implementation

d3_tutorial

dicom-anon

Python DICOM Anonymizer

dsnd_term2

Contains files related to content and project of DSND Term 2

examples

EnvoyAI - Instructions and examples for making your algorithm part of our marketplace

financial-models-numerical-methods

Collection of notebooks about quantitative finance, with interactive python code.

flipside_bounties

Files used for Flipside Crypto bounties

freesurfer

The official FreeSurfer repository maintained by LCN

fs-cwl

Common workflow language wrappers and workflow for FreeSurfer

fs-docker

Dockerfiles for FreeSurfer

fs2dicom

Convert FreeSurfer outputs to DICOM

fs6-cloud

Run FreeSurfer 6.0 in the cloud

girder

A data management platform for the web, developed by Kitware

golem-runner

grabbit

get grabby with file trees

maclaren-test-retest

Analysing the MacLaren test-retest dataset

mdao_streamlit_demo

metamorphometry

metasearch

OpenNeuroLab MetaSearch App

mindboggle

Automated anatomical brain label/shape analysis software (+ website)

mindcontrol

MindControl is an app for quality control of neuroimaging pipeline outputs. Demo:

mindcontrol_docs

Documentation for setting up your own mindcontrol instance