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Brace's Projects

api-example-flask icon api-example-flask

An example Python app on 23andMe's genome API using the flask microframework.

autogpt icon autogpt

An experimental open-source attempt to make GPT-4 fully autonomous.

bcbio.variation icon bcbio.variation

Toolkit to analyze genomic variation data, built on the GATK with Clojure

bedanno icon bedanno

Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104

centos-ldc icon centos-ldc

CentOS 6.5 with latest stable version of LDC compiler installed

cephes icon cephes

Mirror of the Cephes C source for reference

deepomix icon deepomix

A Multi-Omics Scalable and Interpretable Deep Learning Framework and Application in Cancer Survival Prediction

facets icon facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

fastp icon fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

gencore icon gencore

Generate consensus reads to reduce sequencing noises and remove duplications

git-aware-prompt icon git-aware-prompt

Display current Git branch name in your terminal prompt when in a Git working directory.

gridmap icon gridmap

Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).

hgvs icon hgvs

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

libgd icon libgd

GD is an open source code library for the dynamic creation of images by programmers. GD creates PNG, JPEG and GIF images, among other formats.

pctgcdata icon pctgcdata

R datasets of GC percentages for human and mouse genomes

perlmod_faidx icon perlmod_faidx

Perl extension for retrieve fasta seq quickly and lightly by cached samtools index file

plotly.py icon plotly.py

the browser-based graphing library for python

pyhgvs icon pyhgvs

HGVS variant name parsing and generation

reporters icon reporters

Note that ReporteRs has been removed from CRAN the 16th of July 2018 and is not maintained anymore. please migrate to officer.

silk-v3-decoder icon silk-v3-decoder

[Skype Silk Codec SDK]Decode silk v3 audio files (like wechat amr, aud files, qq slk files) and convert to other format (like mp3). Batch conversion support.

so-2908822 icon so-2908822

Code for my answer on StackOverflow (http://stackoverflow.com/a/2970284/168747)

svgo icon svgo

Go Language Library for SVG generation

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