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amplicon_sequencing_pipeline

Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.

anhydeg

Database of anaerobic hydrocarbon degradation genes used for functional gene searching of metagenome data sets

args-oap2.0_2019

ARGs identification and annotation pipeline, forked from biofuture/Ublastx_stageone, please cite ARGs-OAP2.0 and usearch.

fargene

fastx_toolkit

FASTA/FASTQ pre-processing programs

linux-command

Linux命令大全搜索工具，内容包含Linux命令手册、详解、学习、搜集。https://git.io/linux

megahit

MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

metagenome

Metagenome analysis pipeline

metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

mmseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

mypaper-visualization-code

This repository provides Visualization Codes for published article charts

ncyc

note

prodigal

Prodigal Gene Prediction Software

python-100-days

Python - 100天从新手到大师

qiime2

Official repository for the QIIME 2 framework.

shell-for-readfq

A script which use to statistic the number of reads in the fastq file

soapdenovo2

Next generation sequencing reads de novo assembler.

structural-equation-modeling-sem

Source code to evaluate how the factors take part in ARGs or microbial community profile

ublastx_stageone_v2018

This is the source code for multisamples ARGs profiling using SARG2.0 database

vpa-and-ggplot2

This code provides an pipeline for VPA analysis and CCA graph visualization