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awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

axiome

badnetwork

Neural network implementation from scratch.

basenji

Sequential regulatory activity predictions with deep convolutional neural networks.

bioframe

Pandas utilities for tab-delimited and other genomic data files

bioinformaticsexamples

biomedicalnn

Pneumonia classifier using Dense121

bppsuite

Bio++ Program Suite

cooler

A cool place to store your Hi-C

cooltools

The tools for your .cool's

csc642_project

csc648-su20-team01

csc821-finalproject

darknet

Convolutional Neural Networks

datasciencecourse

Data Science Course taught at San Francisco State University, in current development.

deep-learning-models

Keras code and weights files for popular deep learning models.

deepcontacto

Neural net aim to estimate the probability of DNA 3D contact frequency.

deepmicroc

A GAN-based method for turning Hi-C to Micro-C, based on DeepHiC

django-projects

Some tiny projects using Django

dreamnet

Neural net for the DREAM challenge, to predict gene expression from sequence

eigenfaces

Using singular value decomposition to get the most prevalent features of faces and reconstruct them with the eigenvectors.

em_expression

EM algorithm to find rna splicing isophorms

encodec

Chromatin conformation capture data analysis of compartments in look of correlations with ENCODE data.

engr-476

class work at San Francisco State

flask-projects

Some Flask Projects

gpzoo

Multipurpose Gaussian Process library

gtk-projects

hicompartments

Tools to extract compartments from Hi-C Data

hmmc

Analysis of Chip-seq using Hi-C features

hmmonster

This is a tutorial to introduce Hidden Markov Models