Name: Lukas Forer
Type: User
Company: Genetic Epidemiology, Innsbruck Medical University
Bio: Hello, Iām Lukas Forer, a researcher and software developer living in Austria. I love building scientific applications that are efficient and beautiful.
Location: Innsbruck, Austria
Blog: http://www.forer.it
Lukas Forer's Projects
Docker Image of Cloudera Hadoop MapReduce (MRv1)
Available Docker Apps for the Hadoop Workflow System Cloudgene
a collection of cloudgene boilerplates
conan
Annotate snp list with amino acids.
Genomes on the Cloud, Mapping & Variant Calling Pipelines
Create html reports from GWAS summary statistics
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
HelloWorld Application for Cloudgene
Automate interactions with the imputation servers :robot:
Website for ASHG19 Workshop
forer.it website using jekyll
A java library for simple progress monitoring on the console
A DSL to generate beautiful html reports
Simple java API to read, transform, sort, filter and aggregate tables.
My Raspberry
OSSRH-59886
PedVizApi is a Java Api for the visual analysis of large and complex pedigrees. It provides all the necessary functionality for the interactive exploration of extended genealogies. Available packages are mostly focused on a static representation or cannot be added to an existing application; the goal of this open-source library is to provide an application program interface that enables the efficient construction of visual analytic applications for the analysis of family based data.
Applying polygenic scores (PGS) on imputed genotypes
Nextflow pipeline to calculate polygenetic riskscores using pgs-calc
This repository is a collection of Nextflow pipelines to create PGS repositories for PGS-Server or pgs-calc.
Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
A Quarto Extension for the wonderful Eisvogel template https://github.com/Wandmalfarbe/pandoc-latex-template
A web-application to search and compare imputation qualities among different populations, genotyping arrays and reference panels.