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Lukas Forer's Projects

gotcloud icon gotcloud

Genomes on the Cloud, Mapping & Variant Calling Pipelines

haplogrep-cmd icon haplogrep-cmd

HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.

magic-tables icon magic-tables

Simple java API to read, transform, sort, filter and aggregate tables.

pedviz icon pedviz

PedVizApi is a Java Api for the visual analysis of large and complex pedigrees. It provides all the necessary functionality for the interactive exploration of extended genealogies. Available packages are mostly focused on a static representation or cannot be added to an existing application; the goal of this open-source library is to provide an application program interface that enables the efficient construction of visual analytic applications for the analysis of family based data.

pgs-calc icon pgs-calc

Applying polygenic scores (PGS) on imputed genotypes

pgs-calc-nf icon pgs-calc-nf

Nextflow pipeline to calculate polygenetic riskscores using pgs-calc

pgs-repository-builder icon pgs-repository-builder

This repository is a collection of Nextflow pipelines to create PGS repositories for PGS-Server or pgs-calc.

pipeline-umi-amplicon icon pipeline-umi-amplicon

Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers

quarto-eisvogel icon quarto-eisvogel

A Quarto Extension for the wonderful Eisvogel template https://github.com/Wandmalfarbe/pandoc-latex-template

rsq-browser icon rsq-browser

A web-application to search and compare imputation qualities among different populations, genotyping arrays and reference panels.

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