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alternative-splicing-study-under-mineral-nutrient-deficiency

atrtd2_translation_pipeline

baidupcs-go

百度网盘客户端 - Go语言编写

bioinformatic-utils

Script to perform various bioinformatics operations

egrandis_rna-seq

Scripts in profiling expression and AS landscape in Eucalyptus grandis

eig

Eigen tools by Nick Patterson and Alkes Price lab

flo

Same species annotation lift over pipeline.

gffutils

GFF and GTF file manipulation and interconversion

images

indel-seq

Sequencing based indel marker selection and identification

maize_genetic_variants_v5

mikado

Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data and to select the best models in each locus.

monod2

MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

rna-seq-validation

RNA-Seq Validation with High-Resolution RTPCR data

sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads

singlecell_pnm

:sparkles: Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neuron differentiation" by Song and Botvinnik, et al

snp-fingerprints-of-cauliflower

Select a core SNP set for variety identification.

ss-fly

一键脚本搭建ss/ssr并开启bbr内核加速（Ubuntu/CentOS/Debian）

tbtools

GUI/CommandLine Tool Box for biologistists to utilize NGS data.