lynceuslq Goto Github PK
Name: Qian Li
Type: User
Bio: Hi, I am Qian, a bioinformatician - current interest: designing genetic circuits. - previous work: virus metagenomics and phage evolution
Qian Li's Projects
2021-06-21-supervised_machine_learning_as_part_of_an_ebi_systems_biology_course
Session "Supervised Machine Learning" as part of the EBI cours "Systems Biology - From large data sets to biological insight" 2021
assess_genetic_circuits_with_ngs
pipelines which automatically analyze and visualize the performance of genetic circuits with NGS data (RNA-seq so far)
diagramme
A shiny app to build neat viz.js diagrammes with DiagrammeR
dtedit
Editable DataTables for shiny apps with plots!
emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
gatesim
A Shiny App to simulate Genetic gates and sensors with ODE and stochastic process.
gcdt
Genetic Circuit Diagnostics Toolkits
gggenes
➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
javascript-for-r
📚 JavaScript for R CRC Book
plasmapr
Creating plasmid maps inside ggplot.
profiling_eukaryotes
To identify potential eukaryotic components and their compositions in a meta-genome with Centrifuge, as an indication for biological composition in different environments or evidence of host-parasite interaction
profiling_phages_in_metagenomes
A workflow to profile the composition of target phage genomes or those from target hosts
radar
An interactive tool for rapid analysis of diagnostic and antimicrobial pattern in R using Shiny
readsmapping_cwl
CWL workflow for reads processing, including QC, cutting adaptors, aligning and counting scripts
recontructing_genomic_networks
To study the evolutionary history of bacteriophages (particularly those assembled from metagenomes) by reconstructing networks
rvis-sbol
An R package to plot genomic features and bio-systems following SOBL3 standards
shinyab
Shiny Application Calculator of Sample Size for AB test
shinyflourmcmc
Genetic gate and sensor characterisation with Bayesian inference and Hamilton Monte Carlo
shinyfluor
Statistical fluorescence characterisation of genetic gates with shiny app
some_useful_scripts
some small scripts implemented with common bioinformatics tools
viral_proteomics
pipelines to build sequential and functional profiles for RNA viruses
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