ma-compbio Goto Github PK
Name: Ma Lab at CMU
Type: User
Company: Carnegie Mellon University
Bio: Computational Genomics Lab in the School of Computer Science at Carnegie Mellon University.
Twitter: jmuiuc
Location: Pittsburgh, PA, USA
Ma Lab at CMU's Projects
c3
changelocator
cnb
concert
ctcf-mp
dango
deschrambler
fast-higashi
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
fusionhunter
gage-seq
Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
graphene
higashi
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
hyper-sagnn
hypergraph representation learning, graph neural network
ldgm
matcha
multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
mfrt
mochi
multires
mutspace
cancer mutation, mutation signature, sequence embedding
pep
phylo-hmgp
phylo-hmrf
psar
psar-align
raca
scghost
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
sniper
nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder
spaceformer
speid
spicemix
spatial transcriptome, single cell
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