Comments (1)
A good suggestion. We will consider adding that. The way in JAVA HMMRATAC is to take the called regions and revisit the pileup signal tracks to compute these values.
from macs.
Related Issues (20)
- What is the difference between "absolute peak summit" and "summit position" in narrowPeak format? HOT 1
- Q: conversion of output files to UCSC track hub format? HOT 1
- Feat: Enhanced clarification of the specific definition of BEDPE as used by MACS HOT 1
- Feat: Reduction of memory consumption HOT 3
- Q: HMMRATAC output and options for _summit.bed HOT 1
- Q: HMMRATAC producing too many peaks HOT 10
- Bug: undefined symbol: __pow_finite HOT 3
- Q: HMMRATAC reproducibility HOT 2
- Q: how to use MACS3 for ATAC seq with "himmratac" option? HOT 2
- Bug: Callvar throws an error when run on broadPeak file HOT 15
- Q: impact of sequencing throughput on peak calling HOT 4
- Setting cut-off when using logFE bigWig files from bdgcmp
- Q: How to use HMMRATAC to give us a narrow peak file and have signalValue, p and q-value ? HOT 1
- Bug: OverflowError when running hmmratac
- Number of de-duplicated reads indicated by filterdup log does not match number of lines in output BED file.
- Feat: Add --call-summits option in MACS3 bdgpeakcall?
- Q: using macs3 to detect peaks on long-read readings
- MACS3 callpeak does not create UCSC Browser ready peak files HOT 1
- Better cutoff levels control for bdgcallpeak cutoff-analysis HOT 1
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from macs.