Comments (1)
Realized the parse don't like gzipped files.
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Related Issues (20)
- Question: where does the count.txt file come from?
- cluster id mismatch issue in get_abundance_post_collapse.py HOT 3
- chain_samples.py does not work!
- cupcake2 directory missing, compilation fails HOT 4
- Create sam format for collapse_isoforms_by_sam.py
- lima for skera.bam
- fusion_collate_info.py script has bugs and its not working.
- TypeError: iter_gmap_sam() got an unexpected keyword argument 'type' using collapse_isoforms_by_sam.py
- run_preCluster.py HOT 1
- setup.py requires sklearn instead of scikit-learn HOT 1
- fusion_collate_info.py KeyError: 'count_fl' HOT 3
- Cython compiler error when installing/building cDNA_cupcake HOT 2
- solved
- Saturation analysis bug fixes; compatibility with newer isoseq cluster [make_file_for_subsampling_from_collapsed.py]
- AttributeError: module 'numpy' has no attribute 'int'. HOT 2
- ModuleNotFoundError: No module named 'cupcake.tofu' after installing cdna_cupcake in conda subenv HOT 3
- fusion_finder.py HOT 1
- Demultiplex after clustering / genome alignment
- cdna_cupcake与SQANTI3
- collapse_isoforms_by_sam.py out of memory
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