mahesh-panchal/NBIS_project_template
Personal template for making and describing how to do reproducible NBIS support projects
Bioinformatician for @NBISweden . I specialize in genome assembly and Nextflow workflows.
Repositories
mahesh-panchal/Nextflow_sandbox
A playground to explore how to implement things in Nextflow and nf-core
mahesh-panchal/SciLifeLab-genome-portal
This is the repository for the Swedish Reference Genome Portal, a service facilitating access and discovery of genome data of non-model eukaryotic species studied in Sweden
mahesh-panchal/nf-cascade
A proof of concept daisy-chaining Nextflow workflows
mahesh-panchal/nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
mahesh-panchal/nf-metaomics-daisychain
A meta-pipeline of nf-core pipelines for meta-omic analysis.
mahesh-panchal/nf-core-tools
Python package with helper tools for the nf-core community.
mahesh-panchal/configs
Config files used to define parameters specific to compute environments at different Institutions
mahesh-panchal/nf-core-website
Code and files for the main nf-core website.
mahesh-panchal/clean-me-up
A Reproducible Research Training project
mahesh-panchal/workshop-scRNAseq
Single cell RNA sequencing analysis course
mahesh-panchal/Nextflow-multi-entry-workflows
A demonstration of multiple entry workflows.
mahesh-panchal/github-sandbox
A place to play around testing things with Git and Github
mahesh-panchal/erga-EARs
The ERGA Assembly Reports repository 👂
mahesh-panchal/NBIS_Article_Finder
mahesh-panchal/ascc
A Nextflow DSL2 pipeline for the identification of cobiont and contaminating sequences using fasta and pacbio data.
mahesh-panchal/Workflow-Publishing-Guide
A guide to publishing a workflow
mahesh-panchal/bioconda-recipes
Conda recipes for the bioconda channel.
mahesh-panchal/MERQURY.FK
FastK based version of Merqury
mahesh-panchal/sanger-curationpretext
A Nextflow DSL2 pipeline for pretext generation in curation
mahesh-panchal/sanger-tol-ear
ERGA Assembly Report pipeline
mahesh-panchal/mahesh-panchal
mahesh-panchal/sanger-tol-agp-tpf-utils
Code for manipulating AGP and TPF assembly files
mahesh-panchal/ELIXIR-SCO-spatial-omics
mahesh-panchal/test-ghcr
mahesh-panchal/eval-samtools-cpu-efficiency
A test of samtools threading settings from nf-core modules.
mahesh-panchal/dtol-treeval
Pipelines for the production of Treeval data
mahesh-panchal/seqinspector
(hopefully nf-core) pipeline to inspect your sequences
mahesh-panchal/nextflow-duckdb-toy
A Nextflow script using DuckDB to manipulate a CSV file
mahesh-panchal/Earth-Biogenome-Project-pilot
Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.