malachig Goto Github PK

agfusion

Python package to annotate and visualize gene fusions.

alexa

source code for ALEXA arrays project

alexa-seq

ALEXA-seq - alternative expression analysis by RNA-seq

analysis-wdls

Early stages of converting genome/analysis-workflows from CWL to WDL

analysis-workflows

Open workflow definitions for genomic analysis from MGI at WUSM.

archive

Archive of old code that needed tracking (for now)

civic-client

Web client for CIViC: Clinical Interpretations of Variants in Cancer

civic-docs

Source code for the civicdb.org docs

civic-server

Backend Server for CIViC Project

cwl-scripts

misc scripts for working with cwl/toil jobs

dexseq

Dockerfile to use DEXSeq in the cluster

dgi-db

Rails frontend to The Genome Institute's drug gene interaction database.

docker-pvactools

genome

griffithlab.org

Griffith lab research website

immuno_gcp_wdl_rcrf

Running the WASHU Immunogenomics Workflow on Google Cloud - RCRF version

malachigriffith.org

malachigriffith.org

ottr_template

OTTR: Open-source Tools for Training Resources. This is template repository for creating online courses to be published on multiple platforms. See here: https://jhudatascience.org/OTTR_Template/ for a rendered version.

pvactools

pvactools_intro_course

Getting started with pVACtools - pVACseq, pVACbind and pVACview

pythondexseq

Dockerfile with Python to make the pre processing steps for DexSeq

regtools

Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.