malcook Goto Github PK

apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

chordpro-mode

Emacs mode for editing chordpro files

csaw

Clone of the Bioconductor repository for the csaw package.

data.table

R's data.table package extends data.frame:

docopt.r

Command-line interface description language for R (http:docopt.org)

dotfiles

using gnu stow, gnu make to manage dotfiles

easybuild-easyblocks

Collection of easyblocks that implement support for building and installing software with EasyBuild.

easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

easybuild-framework

EasyBuild is a software installation framework in Python that allows you to install software in a structured and robust way.

easybuild-wiki

EasyBuild documentation wiki

filesystem-reporting-tools

Tools to help system administors manage very large file systems. pwalk

genrich

Detecting sites of genomic enrichment

igvshiny

an htmlwidget version of igv, for RStudio and Shiny apps

jaspar-ucsc-tracks

Code and data used to create the JASPAR UCSC Genome Browser tracks data hub

littler

A scripting and command-line front-end for GNU R

malcook.github.io

mpicbg

Fiji module for image transformation and related algorithms

org-html-themes

How to export Org mode files into awesome HTML in 2 minutes

polymode

Object oriented framework for multiple emacs modes based on indirect buffers

quickomics

Quickomics: exploring omics data in an intuitive, interactive and informative manner

r_for_mass_spectrometry-docs

R for Mass Spectrometry documentation

remapenrich

ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.

rmarkdown

Dynamic Documents for R

scimax

An emacs starterkit for scientists and engineers

shinygo

slicerweb

Slicer modules that support web services and web applications

spack

A flexible package manager designed to support multiple versions, configurations, platforms, and compilers.

template

A template for my research projects, based on the R package structure

tpp_sandbox

Using The Trans-Proteomic Pipeline (TPP)

vsc-base

Basic Python libraries used by UGent's HPC group