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amazon-ebs-autoscale

Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.

amazon-genomics-cli

amazon-omics-tutorials

amazon-omics-webapp-integrations

This project contains the webapp sample integrated with Amazon Omics, which allows users such as admin and bioinformaticians to operate Amazon Omics workflow easily and check the run command status with charts and tables.

app-config

apps-spring-cloud-services-labs

arrow

Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

aws-cdk-guide

User guide for the AWS Cloud Development Kit (CDK).

aws-genomics-workflows

Genomics Workflows on AWS

aws-java-nio-spi-for-s3

barclay

Command line argument parser and online documentation generation utilities for java command line programs.

cna-demo-setup

Easy to set up cloud-native architecture demo for PCF. Consists of two apps, greeting-ui and fortune-service. Can be used to demo all three services in Spring Cloud Services, container to container networking, and distributed tracing in PCF Metrics.

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

data-lake-as-code

Data Lake as Code, featuring ChEMBL and OpenTargets

docsy

A set of Hugo doc templates for launching open source content.

fetch-and-run-poc

demonstrate the use of fetch and run strategy with AWS batch from scala

fortune-service

Returns fortunes in random sequence

gatk

Official code repository for GATK versions 4 and up

gdc-dnaseq-cwl

CWL for GDC DNASeq workflows

go-smith-waterman

Demonstration implementation of the Smith Waterman Algorithm in Golang

greeting-ui

Displays fortunes that it obtains from the backend service, fortune-service.

hello-cdk

cdk-tutorial

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

htslib

C library for high-throughput sequencing data formats

miniwdl

Workflow Description Language developer tools & local runner

miniwdl-aws

Extends miniwdl to run workflows on AWS Batch & EFS

miniwdl-omics-run

WDL launcher for Amazon Omics

picard-1

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

reactive-notes