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7tbeast

Adapt the BEaST skull stripping method for 7T MRI as a BIDS app

caffe

Caffe: a fast open framework for deep learning.

cbrain

CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.

conp-dataset

A DataLad dataset for CONP

converttomincobj

The script converts common wavefront .obj file to minc .obj format

experiments_with_k-wave

Experiments with k-wave.org and octave

leapjs

JavaScript client for the Leap Motion Controller

legouscali

lrslibrary

Low-Rank and Sparse Tools for Background Modeling and Subtraction in Videos

medimageprocessing

Personal tools for medical image processing

minc-autoreg-developer

A light version of MINC-autoreg that provides a special version of minctracc that performs 2D multi-slice to 3D volume image registration.

minc-bpipe-library

Library of bpipe implemented commands commonly applied to minc datafiles, suitable for importing into other pipelines

mrtrix3tissue

MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.

patch-based-texture-synthesis

It's an implementation of Efros and Freeman's "Image Quilting and Texture Synthesis" 2001

playground

Play with neural networks!

prept2space

preprocessing for 7T 3D T2 SPACE data

presentations

pylar

This repository contains python implementations on Low-rank Atlas-to-image Registration framework and its applications in medical image analysis and computer vision.

sandbox

This is a repository to be during PerkLab bootcamps for learning using Git

sift3d

Analogue of the scale-invariant feature transform (SIFT) for three-dimensional images. Includes an image processing and linear algebra library with feature matching and RANSAC regression. Also includes IO functions supporting a variety of image formats.

slicerleapmotioncontrol

Control 3D Slicer using the LeapMotion controller

srez

Image super-resolution through deep learning

tensorflow-examples

TensorFlow tutorials and code examples for beginners