mattcieslak Goto Github PK

amico

Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data

ants

Advanced Normalization Tools (ANTs)

antspynet

Medical image analysis framework merging ANTsPy and deep learning

aslprep

bids-client

Holding place for BIDS enabled client

bids-specification

Brain Imaging Data Structure (BIDS) Specification

book

Sources for the DataLad handbook

cbica_containers

containerize dramms, muse and mass

cmp

Connectome Mapper

datalad

Keep code, data, containers under control with git and git-annex

datalad-paper-joss

Repository for JOSS paper on DataLad

dipy

Diffusion MR Imaging in Python

dmri_convert

Code for converting between MRtrix and DSI Studio

dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

drip

Data Release Integrity Pipeline

dsi-studio

Diffusion MRI analysis tool

dsi2

Local termination pattern analysis in python

easy_lausanne

Easy creation of Lausanne2008 atlases

example_fieldmaps

exchange

Flywheel Exchange

fmriprep

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

fmriprep-1

fMRIprep is a functional magnetic resonance image pre-processing pipeline developed by the Poldrack Lab at Stanford University

heudiconv

A flexible DICOM converter for organizing brain imaging data into structured directory layouts

libsrvf

A library for shape analysis of elastic curves, using the square root velocity framework

localvectorrotation

notebook testing local rotations due to displacement transforms

meap

Software for cardiovascular data analysis and visualization

mittens

A Python library for Analytic Tractography

neurodocker

Generate custom Docker and Singularity images, and minimize existing containers

neuromaps

A toolbox for comparing brain maps

nibabel

Python package to access a cacophony of neuro-imaging file formats