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1stsummerschoolofbioinformatics

aimahead_fellowship_mazzotti

Code repository for AIM-AHEAD Fellowship Study

app-flickrperson

PyBossa FlickrPerson Example App

arrayanalysis

Affymetrix microarrays of different technology versions are very often used in transcriptomics analysis. Quality control and normalization approaches do exist, especially as packages in Bioconductor/R. However: - Procedures are often different between teams. - They are not always easy to access as they run through command lines. - It is often not clear what the meaning of the specific settings and results are - They are not always usable for the newer technology types of arrays. To tackle this, we proposed an automated well-documented and user-friendly pipeline for Affymetrix microarray quality control and normalization.

assembly-exercise

Shotgun sequencing of text, in CGI script form

bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

bein

Miniature LIMS and workflow manager for bioinformatics

biobankaccelerometeranalysis

Extracting meaningful health information from large accelerometer datasets

bioinformatics-research-lectures

lecture material for biomedical informatics driven research class

bmin503_final_project

Template repo for Data Science for Biomedical Informatics (BMIN503/EPID600) final project

box-linux-sync

Linux client for Box.com

ccc_materials

Crash Course in Causality Materials

coursera-android

Source Code for Android Course Example Applications

courseragetandcleaningdata

Script and codebook for Get and Cleaning Data Coursera Course Project

curso_ml_2019

Materiais para o curso de machine learning ministrado na UNIFESP (Dezembro 2019)

curso_ml_2019_unifesp

cursobioinfounifesp

Material para o Curso de Bioinformática

cursoml2018

dataclass

Data Science class from coursera.org

datasci_course_materials

Public repository for course materials for the Spring 2013 session of Introduction to Data Science, an online coursera course.

datascience-box

Data Science Course in a Box

datasciencecoursera

datasharing

The Leek group guide to data sharing

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

fitbitscraper

R package to scrape fitbit data

gitbook

Command line utility for generating books and exercises using GitHub/Git and Markdown

gmapsdistance

Future

hctsa

Highly comparative time-series analysis code repository

human_exome_pipeline

human exome pipeline

hypoxemiabenchmarkanalysis

This repository contains the code for the benchmark analysis of different measure of nocturnal hypoxemia and their effect on cardiovascular risk in the Sleep Heart Health Study. This is a collaboration between Diego Mazzotti, Timo Leppänen and Ali Azarbarzin