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bioinformatics-bc

New to Bioinformatics? Start Here!

biological_databases_api

An introduction to Biological Databases and how the API can be used to access data

gitmbelele_tbcure

first repository

intro2machinelearning

introductorygit

introductorylinux-2019

microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

mini-projects

Mini-projects for the residential training

mtbseq_source

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

myfirstfork

Fork this repository and make changes to the README

phylogenetics

This is the repository for the module on phylogenetics (Thursday 11 July 2019)

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

reproducibleresearch

Additional Training materials for workflows and package management

scientific_presentation_skills

shell_intro_for_bioinformatics_stg

Intro to Shell for Bioinformatics - with STG examples

shell_intro_for_transcriptomics

Intro Shell Course Designed as a Precursor for Bioinformatics Courses

workflows_and_package_management

Reproducibility and package management : workflow languages (CWL, Snakemake, Conda).