mbradyneeley Goto Github PK
Name: Brady Neeley
Type: User
Company: Baylor College of Medicine
Bio: PhD Student at Baylor College of Medicine.
Location: Houston, TX
Brady Neeley's Projects
awesome-portfolio-websites
A community maintained open source project aimed at making a personal portfolio for researchers, developers, and analysts simple, fast, and less cumbersome. We make sure you have a full-fledged website to showcase your work while you can spend time on your learning and innovative endeavors.
backup-to-object-storage-snakemake-pipeline
This snakemake pipeline starts with a root directory and archives/compresses all subdirectories and files, and sends result to Object Storage.
bradys-blog
My blog/website with portfolio and fly fishing
cnv-visualizer
CNV region plotter from CRAM/BAM files.
ethseq
Ethnicity Annotation from Whole Exome Sequencing Data
fraser-rnaseq-slurm-parallel-workflow
The default workflow for FRASER from the vignette utilizing the option for parallel computing.
hpo-disease-specificity-index
Using simple oop, built hpo tree for classifying patients based on the specificity of their phenotypes
metabolon-preprocessing-pipeline
Built a pipeline based off and slightly tweaked for project needs off metabolon preprocessing pipeline.
minbpe
Minimal, clean, code for the Byte Pair Encoding (BPE) algorithm commonly used in LLM tokenization.
pezzolesi-lab
Official website for the Pezzolesi Lab
pezzolesi-sentieon-pipeline-getting-started
A variant calling pipeline that walks new lab members through setting up and completing their first run. Includes some updates I made including more flexibility with fasta file names and process walltimes.
rnaseq_pipeline
A nextflow pipeline for RNASeq data analysis
small_gpt_hp
Using torch, built from scratch a small character based decoder only language model. Trained on text from Harry Potter.
vcftotsv-workflow
Built around the vcf2tsv software. Make a tsv from a vcf for the excel lovers in your life.
vim-setup
Set up vim environment to my liking
whisper_real_time_class_scriber
Real time transcription with OpenAI Whisper intended to scribe notes with option to format them
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