mckennalab Goto Github PK
Name: The McKenna lab
Type: Organization
Location: Dartmouth College
The McKenna lab's Projects
butcher
A opinionated read trimmer
circuitseq
Nanopore Plasmid Sequencing
clique
Read alignment and collapsing for lineage data
counterfeiter
simulated lineage trees with cell patterning options
covid_scheduler
auto-schedule people for COVID lab access
custom_barcodes
Generation of custom sequencing barcodes
dupscoop
Remove duplicate segments from small, circular genome assemblies
editing_plots
split out the editing plots to refactor them
flashfry
FlashFry: The rapid CRISPR target site characterization tool
gene111
Notebooks and code for Dartmouth's GENE111 class
gene_146
Code and course material for Gene/QBS 146: Foundations of Bioinformatics I
hugo_academic_website
the templated version of the website
mckennalab.github.io
the rendered version of the website
nextlineage
Lineage recorder processing using NextFlow
penngrader
A seamless in-line Jupyter Notebook autograder.
physicell-studio-2.26.122
samtofasta
Convert a SAM and reference files into a paired FASTA alignment file
sc_gestalt
GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing
scimaul
SCIMaul: A read splitter for single-cell experiments
singlecelllineage
Updated scripts and pipelines for processing GESTALT data at single-cell resolution
treeutils
A simple Scala tool to handle running the PHILIP MIX parsimony program and generating JSON output trees
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