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MCW DSI overview

bam2tensor

Convert methylation data to sparse objects for machine learning.

common_utils

demo-app-ontology

Automatically exported from code.google.com/p/demo-app-ontology

dron

dron-chebi-mapper

Calls BioPortal API to look for matches in ChEBI to DrOn ingredient terms derived from RxNorm

dron-query

command line app for querying Drug Ontology using DL queries via reasoner

dron-query-sparql

SPARQL queries written against Drug Ontology

exposd

The EXPOSD ontology represents surrogate data and markers for envirnmental exposures and health outcomes.

general-conversion-to-owl2

Java code to convert conventional data into to OWL2

geographical-entity-ontology

An ontology and inventory of geopolitical entities (such as sovereign states and their administrative subdivisions) as well as various geographical regions (including but not limited to the specific ones over which the governments have jurisdiction)

iso8601

Implementation of ISO 8601 date/time formatting standard

m1-df-only

Implementation of M1 with data format matching only

mcc-portal-rdf-constraints

mcwdsi.github.io

Website for the Data Science Institute at the Medical College of Wisconsin

mdc-dats-processor

A parsing script written in Python 3.5 that parses DATS JSON files for datasets in the MIDAS Digital Commons.

mdc-sparql

sparql queries for the midas digital commons

mdc-stardog-scripts

Command line shell scripts for loading, backing up, saving off data from the Stardog backend of the MIDAS Digital Commons and OBC.ide

mdc_api

This api connects to the mdc stardog db specified and retrieves the data for the mdc_search

mdc_meter

SPARQL queries to compute FAIR metrics in MIDAS Digital Commons

mdc_search

SPARQL queries for searching MIDAS Digital Commons for valid combinations of datasets and software

mdc_tree

midas-data-mapping-to-apollo-sv

obc-ide-owl

OWL files for the OBC.ide project

obc-pubmed

obc_api

omrse

The Ontology for Modeling and Representation of Social Entities

orcs

Ontology for Representing CDM Semantics

owl-utils

some useful things done with owl-api, based on a generic, template-method based GenericOwlFileProcessor

pcorowl

Modelling the PCORnet CDM in an OBO Compliant OWL Ontology