meadm Goto Github PK

abaa

Scripts from Mead, M.E.*, Borowsky, A.T.*, et al. (2020). Recurrent loss of abaA, a master regulator of asexual development in filamentous fungi, correlates with changes in genomic and morphological traits. Genome Biol. Evol. 12:119-1130.

afischeri

Scripts associated with Mead, M.E., et al. (2019). Characterizing the pathogenic, genomic, and chemical traits of Aspergillus fischeri, a close relative of the major human fungal pathogen Aspergillus fumigatus. mSphere. 4:e00018-19.

general

General scripts for bioinformatics and parsing

introduction

miscellaneous

Miscellaneous scripts for a variety of projects and purposes

section-fumigati-comparative-genomics

Scripts from Mead, M.E., Steenwyk, J.L., et al. (2021). An evolutionary genomic approach reveals both conserved and species-specific genetic elements related to human disease in closely related Aspergillus fungi. Genetics. 218:iyab066.

vanderbilt-data-essentials-cohort-2

vosa-velb-weta

Scripts from Wu, M.-Y., Mead, M.E., et al. (2021). Transcriptomic, protein-DNA interaction, and metabolomic studies of VosA, VelB, and WetA in Aspergillus nidulans asexual spores. mBio. 12:e03128-20

weta_aflav

Scripts from Wu M-Y, Mead ME, Kim S-C, Rokas A, Yu J-H (2017) WetA bridges cellular and chemical development in Aspergillus flavus. PLoS ONE 12(6): e0179571. https://doi.org/10.1371/journal.pone.0179571

weta_aflav_anidu_afumi

Scripts from Wu M-Y, Mead ME, Lee M-K, Ostrem Loss EM, Kim S-C, Rokas A, Yu J-H. 2018. Systematic dissection of the evolutionarily conserved WetA developmental regulator across a genus of filamentous fungi. mBio 9:e01130-18. https://doi.org/10.1128/mBio.01130-18.