meldaw84 Goto Github PK
Name: meldaw
Type: User
Company: Qatar Biomedical Research Intitute
Bio: Researcher Associate. Start a journey in bioinformatics, computational biology, and data analysis, to utilize these skills in research.
Location: Qatar
meldaw's Projects
ac-icam-nm
Code related to the 2023 AC-ICAM manuscript in Nature Medicine.
adkgromacstutorial
Basic tutorial for running and analyzing a Gromacs MD simulation of AdK
advanced_sampling_tutorials
A repository providing jupyter notebooks and simulation inputs that accompany the mini course Hands-on tutorials: Advanced sampling methods using GROMACS
alphafold
Open source code for AlphaFold.
alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
animatplot
A python package for animating plots build on matplotlib.
aquarel
Styling matplotlib made easy
autodock-gpu
AutoDock for GPUs and other accelerators
autodock-vina
AutoDock Vina
awesome-bioinformatics
A curated list of awesome Bioinformatics libraries and software.
bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
cbioportal
cBioPortal for Cancer Genomics
chroma
A generative model for programmable protein design
colabfold
Making Protein folding accessible to all!
dask
Parallel computing with task scheduling
deeprank
Deep learning framework for data mining protein-protein interactions using CNN
deeprank-gnn
Graph Network for protein-protein interface
dlscore
DLSCORE: A deep learning based scoring function for predicting protein-ligand binding affinity
dockq
DockQ is a single continuous quality measure for protein docked models based on the CAPRI evaluation protocol
evodock
A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
flexaid
Flexible Artificial Intelligence Docking
foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
geoblender
Tutorials for making 3D-looking maps with Blender and QGIS
gmx_mmpbsa
gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
gmx_tutorials_livecoms
LiveCoMS GROMACS Tutorials Paper
gmxapi
(outdated) fork of https://gitlab.com/gromacs/gromacs
gnina
A deep learning framework for molecular docking
gradio
Build and share delightful machine learning apps, all in Python. 🌟 Star to support our work!
gridmat-md
GridMAT-MD membrane analysis program
gromacs-colab
Contains gromacs notebooks for MD simulations.
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