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albert_zh

A LITE BERT FOR SELF-SUPERVISED LEARNING OF LANGUAGE REPRESENTATIONS, 海量中文预训练ALBERT模型

autotrain-advanced

🤗 AutoTrain Advanced

benchmarking_2023

Shared data from 2023 peptide docking benchmarking paper

cadd-tutorial

CADD（计算机辅助药物设计）学习资料

camp

predicting peptide-protein interactions

chemprop

Message Passing Neural Networks for Molecule Property Prediction

controlled-peptide-generation

source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molecular Dynamics"

deeppurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

dgl

Python package built to ease deep learning on graph, on top of existing DL frameworks.

dgl-lifesci

Python package for graph neural networks in chemistry and biology

drfp

An NLP-inspired chemical reaction fingerprint based on basic set arithmetic.

drugassist

DrugAssist: A Large Language Model for Molecule Optimization

ecfinder

A tool for assignment of EC numbers to enzymatic reactions

evoplay

fp-gnn

fragment_based_retrosynthesis

Program and data for fragment-based retrosynthesis planning

jsme-editor.github.io

llama-factory

Unify Efficient Fine-tuning of 100+ LLMs

llama2-chinese

Llama中文社区，最好的中文Llama大模型，完全开源可商用

llm-engine

Scale LLM Engine public repository

masif

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

meta-haox

meta-ugt

mmseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

moleculartransformer

moltrans

MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)

opennmt-py

Open Source Neural Machine Translation in PyTorch

pepscaf

progen

Official release of the ProGen models

prollama

A Protein Large Language Model for Multi-Task Protein Language Processing