Comments (1)
Hi @ereyred, apologies for the very late response. An example AUGUSTUS output anvi'o is able to work with is shown here:
https://anvio.org/help/main/artifacts/augustus-gene-calls/
I just tested, and everything seems to be working with output files formatted as such.
Here are some questions if you're still interested in pursuing this issue: Which version of AUGUSTUS are you using? If it is not 3.3.3, would you please send me the actual output file from the program? The information you shared above is not quite useful to identify the problem :/
Best wishes,
from anvio.
Related Issues (20)
- [FEATURE REQUEST] Add another option for anvi-script-add-default-collection HOT 1
- [BUG] Product attribute in GFF output can include reserved characters HOT 1
- update db version HOT 2
- [BUG] SRA download workflow not working HOT 2
- TypeError with anvi-profile HOT 3
- [BUG] Anvi-cluster-contigs with concoct hangs due to OpenBLAS warning HOT 1
- [FEATURE REQUEST] Make a better anvi-script-gen-short-reads HOT 2
- [DISCUSSION] repeated entry in functional enrichment groups--txt file
- [FEATURE REQUEST] Option to automatically migrate dbs when running `anvi-export-contigs` HOT 3
- [BUG] anvi-setup-ncbi-cogs error HOT 2
- Config Error of anvi-display-pan HOT 1
- [BUG] Length mismatch error in anvi-run-hmms HOT 8
- [BUG] Unable to build KEGG db in non-standard location. HOT 2
- Replicate genome dendrogram HOT 3
- [FEATURE REQUEST] Add "function" column to anvi-compute-functional-enrichment-across-genomes output HOT 2
- anvi-rename-bins_ Config Error HOT 5
- [FEATURE REQUEST] Expanding SCGs for anvi-estimate-scg-taxonomy
- [FEATURE REQUEST] update dbCAN2 → dbCAN3 for anvi-setup-cazymes HOT 15
- [FEATURE REQUEST] Organize contigs by length in interactive interface HOT 3
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from anvio.