[BUG] Config Error: Drivers::Muscle: anvio-8 about anvio

[meren]

Config Error: Drivers::Muscle: Something went wrong with this alignment that was working on 6
              sequences :/ You can find the output in this log file:                         
              /tmp/tmp1jslp7u3/00_log.txt

What does the log file say, @Alesita0381?

[Alesita0381]

@meren This is what the log file says:

DATE: 17 Mar 24 11:03:28

CMD LINE: muscle -quiet

THIS IS THE OUTPUT YOU ARE LOOKING FOR:

[meren]

This is weird and makes no sense :(

Would you consider switching to the master branch and testing your run there, @Alesita0381?

[Alesita0381]

Can you be a little more specific? El dom., 17 mar. 2024 12:22, A. Murat Eren (Meren) ***@***.***> escribió:

…

This is weird and makes no sense :( Would you consider switching to the master branch and testing your run there, @Alesita0381 <https://github.com/Alesita0381>? — Reply to this email directly, view it on GitHub <#2243 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/BGM7MBKUFKCAT7SXWQOWBNLYYXGOPAVCNFSM6AAAAABEZMRBMCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDAMBSGU2DKNJZGE> . You are receiving this because you were mentioned.Message ID: ***@***.***>

[ivagljiva]

@Alesita0381 , please install the development version of anvi'o and test the same command using that version :)
we cannot tell from the log file what is wrong with the muscle run, but before we can do any debugging (which would happen in the development version anyway), we want to make sure that this remains a problem when you upgrade.

[Alesita0381]

HI @meren I already installed what the instructions indicated and it worked, thank you!!!!!
I only have one question left. Why when I run anvi-interactive does it not show me the names of the bacteria in the phylogenetic tree? only appears the project name no the estimated taxonomy

i run like this:
anvi-interactive -p phylogenomic-profile.db -t phylogenomic-tree.txt --title "Pseudomonas_tree" --taxonomic-level t_species --manual

[Ge0rges]

Hey @Alesita0381 you might get more prompt help/or perhaps find the answer on the Discord.