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meren avatar meren commented on August 30, 2024 1

This looks like a memory issue, so there is not much we can do. BUT, there is always a way. In this case, I one could split their contigs-db file into 10 different ones using a collection-txt and anvi-split, then run anvi-run-kegg-kofams on each one of them separately, and then export the contents of gene_functions table from each one of them, and then manually import the final hits into the original contigs-db.

But this is a hacker's workaround, and a machine with a larger memory would have been the most optimal solution of course :)

from anvio.

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