Pangenome analysis when dispaly result, can't see the Phylogenetic tree about anvio

[meren]

Is this prematurely sent? :) I don't see a question here. Neither I see the screenshot.

[GZL217]

how about now? I already uplode the picture

[meren]

It didn't work again.

[metehaansever]

I can't see either. Can you wait until you see the preview after uploading the image?

[GZL217]

no

[metehaansever]

Maybe you can share in our discord channel: https://discord.com/invite/C6He6mSNY4

[GZL217]

thanks I am try

[GZL217]

[GZL217]

finally！！

[GZL217]

[meren]

Ah. If there are more than 25,000 gene clusters, a dendrogram is not computed automatically (which is not a phylogenetic tree, but a clustering dendrogram).

That said, if you look at the help menu of the anvi-pan-genome, you will see that there is a parameter to 'enforce' it. If you re-run it with that flag, it should work.

[GZL217]

the picture have already uplod so you can see there is no Phylogenetic tree in the middle of the diagram

[meren]

I understand that. Please read my message again, @GZL217.