Comments (2)
We should create a cheatsheet or a standard workflow of commands so we know which ones to use and which ones to avoid.
from thmm.
@alexlim97 https://asmlab.slack.com/archives/CC9BW18HY/p1538768246000100 here's a workflow for setting it up:
- login to the aretha server with the link Dr. Meyer provided
- open a terminal in the jupyter landing page
git clone [email protected]:meyer-lab/lineage-growth.git
doesn't work- generate a new ssh key with
ssh-keygen -t rsa
--(press enter to use all the default options and enter no password) - copy the contents of the
rsa_id.pub
into your clipboard and add it as a new ssh key on Github
--(I did this by
--cp rsa_id.pub rsa_id.txt
,
--mv rsa_id.txt ~
,
--cd ~
and opening the text file and copying) - after setting it up on Github, git cloning works using
git clone [email protected]:meyer-lab/lineage-growth.git
Once you've set this up, we can decide how we'll manage branches.
from thmm.
Related Issues (20)
- Post a purely computational preprint?
- AIC for synthetic data is not as good as it used to be HOT 1
- Manuscript tables should be in markdown
- a to do list for manuscript edits and remaining issues HOT 1
- figure 8 and 9 are different each time we run HOT 1
- First make sure you are writing the linear constrain correctly before applying that in the estimator
- JOSS submission
- Issue for Sean's comments
- adjust dof for AIC after merging at once PR. HOT 2
- There is no methods description of the emissions fitting
- Captions throughout need to read less like results text HOT 1
- tests and some figures fail for a new assertion
- population-level graph of cell states over time HOT 1
- Change over all figures HOT 1
- Figures S11, S12, S13 have inconsistent capitalization HOT 3
- unit tests for ALL functions -- downward rec. and upward rec
- cell barcoding computational experiment
- Some figure-related issues from reviewer comments HOT 1
- importing the new lineage data HOT 8
- Cross validation as model selection HOT 1
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from thmm.